MXO04053.5prime Sequence
897 bp (795 high quality bases) assembled on 2007-07-18
> MXO04053.5prime
CAGTCGACATGGCAGCCGGTGTCTTCAAGAGTTTTATGCGCGACTTCTTT
GCGGTGAAATACGATGAGCAGCGAAATGATCCGCAAGCGGAACGACTGGA
TGGCAACGGACGACTGTATCCCAACTGCTCGTCGGATGTGTGGCTGCGAT
CCTGCGAGCGGGAGATAGTTGATCCCATTGAGGGCCATCACAGCGGGCAC
ATTCCCAAATGGATATGCGGTAGTCTGTTGCGCAATGGACCCGGCAGCTG
GAAGGTGGGCGACATGACCTTCGGCCATCTGTTCGACTGCTCCGCCCTGC
TGCACCGATTTGCCATTCGGAATGGACGCGTCACCTACCAGAATCGCTTC
GTGGACACGGAAACACTGCGAAAGAATCGCTCTGCCCAGCGGATTGTGGT
CACGGAGTTTGGCACAGCTGCTGTTCCGGATCCCTGTCACTCGATCTTCG
ATAGATTTGCGGCCATTTTTCGACCGGATAGTGGAACGGATAACTCGATG
ATTTCCATATATCCTTTCGGGGATCAGTATTACACATTTACGGAGACGCC
TTTTATGCATGAATAAATCCCTGCACTTTGGCCACCGAAGCACGAATCTG
CACCACCGACTTCGTGGGCGTGGTGAACCACACATCGCATCCGCATGTTC
TTCCCAGTGGCACTGTCTACAACCTGNGCACCACAATGACCAGATCTGGA
CCGGCATACACTATACTCAGTTTCCCGCACGGCGAGCAGATGTTCGAGGA
TGCTCATGTGGTGGCCACACTGCCGTGCCGCTGGAAACTGCATCCCGGAT
ATATGCACACCTTCAGCTTAACGGATCACTACTTTGTGATTGTGGAGCAG
CCGTTGTCCGTTTCGCTTACGGAGTATATCAAAGCCCAGCTAGGTGG
MXO04053.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:08:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9347-PA | 1863 | ninaB-RA | 1..552 | 9..560 | 2760 | 100 | Plus |
| CG9347-PA | 1863 | ninaB-RA | 554..890 | 561..897 | 1616 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ninaB-RA | 2164 | CG9347-RA | 137..1026 | 9..897 | 4384 | 99.6 | Plus |
| f-cup-RF | 2885 | CG9611-RF | 92..138 | 55..9 | 235 | 100 | Minus |
| f-cup-RD | 2532 | CG9611-RD | 92..138 | 55..9 | 235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13701068..13701575 | 53..560 | 2540 | 100 | Plus |
| 3R | 32079331 | 3R | 13701634..13701970 | 561..897 | 1644 | 99.1 | Plus |
| 3R | 32079331 | 3R | 13700701..13700747 | 9..55 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:50:55 has no hits.
MXO04053.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:08:14 Download gff for
MXO04053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9347-PA | 1..890 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:44 Download gff for
MXO04053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaB-RA | 131..1026 | 1..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:42:18 Download gff for
MXO04053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaB-RA | 131..1026 | 1..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:18 Download gff for
MXO04053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13701635..13701970 | 562..897 | 99 | | Plus |
| 3R | 13700695..13700745 | 1..53 | 92 | -> | Plus |
| 3R | 13701069..13701577 | 54..561 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:44 Download gff for
MXO04053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9527357..9527692 | 562..897 | 99 | | Plus |
| arm_3R | 9526417..9526467 | 1..53 | 92 | -> | Plus |
| arm_3R | 9526791..9527299 | 54..561 | 99 | -> | Plus |
