MXO04054.5prime Sequence
897 bp (801 high quality bases) assembled on 2007-07-18
> MXO04054.5prime
CAGTCGACATGTCGGGGGCTGGAGAACACTCAGATGAAGAGTCCTATGGA
GAGGAGTCCTTCGAGGAGGACTCGGAGTCGGAGGTGGAGGTGGAGGAAGA
AGAGATTGAGTATATTGAGCCAGAGGAGTCAAAACCAAGTGACGCTCTTC
TGTTGGGGGAGAGCGACACCCAAAGCGAGAGCGATGTGAAAGAAGAGTTT
CTTAGCGGCAACCCACACGCCCGTCGCTATTTGGGCGCCCGAGTGGTGTC
CTACCTGAGTTCCTCCTCTGACGACGAAAGCCAAGTGGTCATCACCAAGA
CGGTAGCCGAGGTAAATCAACTAAGTCTGCGAGTGGACACGCCTCCGGAG
GATGAGACGCCCTCGGTGCGCACTCTGATGCCAGGCAGTGCCCATTCTCG
GGTTAAGGATGAGGACGAGGCTGAAGACGAGGATGATGACGAAGGTGATG
GCGAAAATGATAACGATAATGAGGACGAGAATGATGACGAGGATGCTGAA
GTCGAGGAAATCGAAGAAGAGGAGGAAGAAATTCCAGGAGACGAAGACGA
CGCCCAAAGCGATGGATCCATGGGGTCGTCAATCCGCCGACGACAGCGAC
GAGGAGGAGGGCACGGATGTGGAAGTGGAGCAGCTGGAGGAGGACGAACC
AATTGTAACAGCTGTGTGCAAAAAGACGGTCCAGAAGGAGTTACCACCGC
CCCAGAAGGACATTGTTTCGCTGGTCGATGCCAGTGATAACAGTAGTGAG
CACAGTGTGGTCACCATGTGTGCATCAGGAGACGAAACAGACAACACCTT
GGTGAAGTATCCTAGATTACGAAAGCAGCAACCACTTACTGCTAAGGATT
CGCATTCGCTAAAAGAGCAGGAAGAACCGGGAAGAACGGGAACAACC
MXO04054.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7669-PA | 1815 | CG7669-RA | 1..566 | 9..574 | 2830 | 100 | Plus |
| CG7669-PA | 1815 | CG7669-RA | 564..871 | 573..880 | 1515 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hmw-RA | 2041 | CG7669-RA | 133..1019 | 9..897 | 4365 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18362402..18363016 | 213..828 | 3030 | 99.8 | Plus |
| 3R | 32079331 | 3R | 18362126..18362329 | 9..212 | 1020 | 100 | Plus |
| 3R | 32079331 | 3R | 18363069..18363139 | 826..897 | 280 | 95.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:01:00 has no hits.
MXO04054.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:08:19 Download gff for
MXO04054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7669-PA | 1..887 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:23 Download gff for
MXO04054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7669-RA | 129..1019 | 1..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:04 Download gff for
MXO04054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hmw-RA | 129..1019 | 1..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:04 Download gff for
MXO04054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18362122..18362329 | 1..212 | 98 | -> | Plus |
| 3R | 18362402..18363016 | 213..828 | 99 | -> | Plus |
| 3R | 18363072..18363139 | 829..897 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:23 Download gff for
MXO04054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14187844..14188051 | 1..212 | 98 | -> | Plus |
| arm_3R | 14188124..14188738 | 213..828 | 99 | -> | Plus |
| arm_3R | 14188794..14188861 | 829..897 | 95 | | Plus |
