MXO04055.5prime Sequence
867 bp (839 high quality bases) assembled on 2007-07-18
> MXO04055.5prime
CAGTCGACATGCTGCAAAACAGTTTCAAACTGGCCCAGAGCCTTCGAAAC
GGCTTCTACAGAAACGCCTGGCGAGCGTTCAGCTCCCACGGACCCCGGCA
GCCACTGGTTTCGCCGGAGCGGCGCTTGGAAAAGGCGCATCCAACCTTCA
CGGAAAGGAGTCAGTTGAAGTACGCCCGGAGGCTGGTGGTCAAGTTGGGC
AGTGCAGTCATTACTCGAGAGGACAACCATGGACTAGCCCTCGGCCGTCT
GGCCTCTATTGTGGAGCAGGTTGCCGAGTGCCATTTGGAAGGACGTGAAG
TGATGATGGTCACCAGCGGAGCGGTGGCCTTTGGAAAGCAGAAGCTCGCC
CAGGAGCTGCTCATGTCGCTGTCCATGCGCGAGACACTAAACCCAAAAGA
TAGCAAAGAGTTTGACGGCGCTACGCTGGAACCGCGAGCAGCGGCTGCGG
TGGGTCAGTCGGGTCTGATGTCCCTCTACGACGCGATGTTTGCCCAGTAC
GGCGTCAAGATAGCCCAGGTGCTCGTGACCAAGCCGGACTTTTACAACGA
GGAAACACGCAACAATCTCTTCTGCACGCTCTCCGAATTAATTAAGCCTG
AATATTGTGCCAATCATAAATACTAACGACGCCGTCTCCCCGCCAATGTT
CATACGTGACGACGAGCCAGCCGGCGGAGCCCGGAGGGGTATTCCCATTA
AGGACAACGACAGCTTGTCTGCCATGCTGGCCGCCGAGGTGCAGGCGGAT
CTGCTAATCCTCATGTCGGACGTCGATGGCATCTACAATAAGCCGCCGTG
GGAGGACGGGGCCAAGCTGATGCACACATACACCAGCGACGACAGCAACA
GCATCGAGTTTGGCAAA
MXO04055.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:08:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7470-PA | 2331 | CG7470-RA | 1..586 | 9..594 | 2930 | 100 | Plus |
| CG7470-PA | 2331 | CG7470-RA | 586..858 | 595..867 | 1365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7470-RB | 4686 | CG7470-RB | 146..1003 | 9..867 | 4270 | 99.9 | Plus |
| CG7470-RA | 2868 | CG7470-RA | 146..1003 | 9..867 | 4270 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21977192..21977372 | 687..867 | 905 | 100 | Plus |
| 3L | 28110227 | 3L | 21976295..21976461 | 105..271 | 835 | 100 | Plus |
| 3L | 28110227 | 3L | 21976966..21977136 | 517..688 | 810 | 99.4 | Plus |
| 3L | 28110227 | 3L | 21976582..21976724 | 268..410 | 715 | 100 | Plus |
| 3L | 28110227 | 3L | 21976784..21976895 | 409..520 | 560 | 100 | Plus |
| 3L | 28110227 | 3L | 21972147..21972242 | 9..104 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:19:39 has no hits.
MXO04055.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:08:24 Download gff for
MXO04055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7470-PA | 1..855 | 9..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:09 Download gff for
MXO04055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7470-RA | 146..1000 | 9..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:19 Download gff for
MXO04055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7470-RA | 146..1000 | 9..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:19 Download gff for
MXO04055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21976295..21976459 | 105..269 | 100 | -> | Plus |
| 3L | 21976584..21976724 | 270..410 | 100 | -> | Plus |
| 3L | 21976786..21976893 | 411..518 | 100 | -> | Plus |
| 3L | 21976968..21977135 | 519..687 | 99 | -> | Plus |
| 3L | 21977193..21977369 | 688..864 | 100 | | Plus |
| 3L | 21972147..21972242 | 9..104 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:09 Download gff for
MXO04055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21965247..21965342 | 9..104 | 100 | -> | Plus |
| arm_3L | 21969395..21969559 | 105..269 | 100 | -> | Plus |
| arm_3L | 21969684..21969824 | 270..410 | 100 | -> | Plus |
| arm_3L | 21969886..21969993 | 411..518 | 100 | -> | Plus |
| arm_3L | 21970068..21970235 | 519..687 | 99 | -> | Plus |
| arm_3L | 21970293..21970469 | 688..864 | 100 | | Plus |
