MXO04056.5prime Sequence
884 bp (567 high quality bases) assembled on 2007-07-18
> MXO04056.5prime
CAGTCGACATGATTCGGCTACTCAAGACGCTTCTTTATTGCCTGCTCCTC
ATCTCCCCTGCTGATGTGCTGGGCCGGCTTAATGCCAGAAAGTCGGCGAA
CGAGGCGAGTCTCTATAGCGATACAGACAATGTGATTATGTTGGACATCG
AATCGCTGAGGCCAGCTCTAAACTTGAAGAACAGCAAGCTGGTTCAGTTC
CTCAACAGCTTCTGCGGTGACTGTCATCGCTTCGCACCGGTCTTCAAGAC
CCTTTCCCGCGACCTCTACAAGTGGCGAAGAATTCTCCGGATCTATGCCG
TATATTGTGCCCAGGAGAGAAATGCTCAACTCTGCAGGGAATTCAATATC
CGCCAGACGCCATCATTGCGATTCTTTGGTCCCGACATGAGGAAGAACGA
TGATGTTCTTGGAGCGGTAATCCCAGGCCAAGATCCCGAGTTCATTAGCT
CAACACTGGCCGAATTGGTATCCCAAAATGACTATGGACCCGGCCAGCCA
AACTTTCGTCCCCTAAAAGCAACAGACTATGAAATTTTCCAAGATCAAGA
TGGGGAAACTCCAATACAAATTTGTGGCTCTTGTCCTTCAGCCAAAAAAT
TCAAAGATCGGCAGGGACACGCTGCTAGAACTGCTGCCATTCAAAGAGCT
ATCGGTGAGGATAATCGAAGATTCTCAGATATTTAACGAATTTGGACTGG
GTCCCGACGACCAAAAACTGGCTATAGTTGATAGAAATGGAACCGCCCAG
TATCTTACACCATCTTCGGACTCCAGTGAAGCGTATGCCAGCACTATTGC
AGACTTCCTTAAGAACAGCAATATTCAGCCAGATCCACCACTACCCATCG
CTGTAGCCCCAAACTTTACTGAATTTCTGGATCA
MXO04056.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:08:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17843-PA | 1659 | CG17843-RA | 1..561 | 9..569 | 2730 | 99.4 | Plus |
| CG17843-PA | 1659 | CG17843-RA | 560..875 | 569..884 | 1505 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17843-RA | 1800 | CG17843-RA | 43..917 | 9..884 | 4265 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21913789..21914663 | 9..884 | 4240 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:50:58 has no hits.
MXO04056.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:08:29 Download gff for
MXO04056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17843-PA | 1..874 | 9..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:46 Download gff for
MXO04056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17843-RA | 33..916 | 1..883 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:42:21 Download gff for
MXO04056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17843-RA | 33..916 | 1..883 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:21 Download gff for
MXO04056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21913779..21914662 | 1..883 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:46 Download gff for
MXO04056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17739501..17740384 | 1..883 | 98 | | Plus |
