MXO04057.5prime Sequence
794 bp (693 high quality bases) assembled on 2007-07-18
> MXO04057.5prime
CAGTCGACATGGAGAGCTTTGCGCCGGAATTACTTTGGATGGTAGTCATC
GGATTCCTAATCGCCTTCGTACTCGCCTTTGGCATCGGTGCCAACGACGT
GGCCAACTCATTTGGCACCAGTGTCGGCTCCGGTGTTCTGACCATCCGGC
AGGCATGCGTGCTGGCCACCATTTGCGAAATTTCGGGTGCCGTTTTGATT
GGCTACAAGGTATCGGATACCATGCGCAAGGGAATCCTAGAAGTTGGCCT
ATACGAGGGCGCCGAGGAGGTTCTGATGCTGGGCTGCGTGGCCGCATTGG
CCAGTAGCGCCGTTTGGCTGCTGGTGGCCACCTTTTTGAAGTTGCCTATT
TCGGGAACGCACAGTATCGTTGGCTCTACCATTGGATTTTCGCTAGTGGC
GCGCGGTGTACAGGGCCTAAAGTGGTCTACTTTGGGCACAATCGTCGGAT
CGTGGTTCATCTCACCGGTGCTGAGTGGAATTGTGAGCATTCTGCTCTTC
CTGGCCATTCGTCGTTTCATCCTACGTGCCCAGGAGCCGCTCAAGGCCGG
ATTTCGATCGCTGCCCATCTTCTACGGTGTAACGTTCTTCATCAACGTTA
TCAGCGTTGTGTTGGACGGGCCCAAGCTGCTCTACATGGACAACATACCC
ACTTGGATAGCACTGACCGCCAGTTTTGGTCTCTCTTTGCTGGTGGCATT
GCTTACGCAATTGGTAGTGGTGCCTTTGCAGCGGCGCAAGATTGCCAAAC
GATTGCGGGCCGAGAATCCTGTCAAGTTTAATTTCAAGGACTCC
MXO04057.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:08:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7628-PA | 2004 | CG7628-RA | 1..786 | 9..794 | 3905 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42575-RB | 2953 | CG42575-RB | 287..1072 | 9..794 | 3915 | 99.9 | Plus |
| CG42575-RA | 3715 | CG7628-RA | 1049..1834 | 9..794 | 3915 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11129952..11130545 | 201..794 | 2955 | 99.8 | Plus |
| 3L | 28110227 | 3L | 11129688..11129881 | 9..202 | 970 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:47:43 has no hits.
MXO04057.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:08:33 Download gff for
MXO04057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7628-PA | 1..786 | 9..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:23 Download gff for
MXO04057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42575-RA | 1041..1834 | 1..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:13 Download gff for
MXO04057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42575-RA | 1041..1834 | 1..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:13 Download gff for
MXO04057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11129680..11129880 | 1..201 | 98 | -> | Plus |
| 3L | 11129953..11130545 | 202..794 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:23 Download gff for
MXO04057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11122780..11122980 | 1..201 | 98 | -> | Plus |
| arm_3L | 11123053..11123645 | 202..794 | 99 | | Plus |
