MXO04060.5prime Sequence
886 bp (734 high quality bases) assembled on 2007-07-18
> MXO04060.5prime
CAGTCGACATGGAAAGTCCCTGTGAATCCGAAAGTTCGCTGGACGGTGGC
ACCATGCTGCCACCAAGCCCAGTTTCCCGGGAGCAACTCCAGAAGAGGAT
CGAATCGCTCACCCAGCAGAACAAGGTGCTGAAAGCCGAACTGGATACCT
TCAAGACCAAGTGCAAAGTGGTGCAAGAGGAGAATCGCTGCCTCAAGCAA
GCCTCAGTCATCATTCAAGCCAAAGCCGAGCAGGAGGAAGAATACATCTC
AAACACGCTGCTAAAAAAGATTCAGGCCCTCAAAAAGGAGAAGGAGACTC
TGGCGCACCACTACAAGCGCGAGGAGGAGTGTCTGACCAACGATCTCTCC
CGGAAGCTCGACCAGCTGCGTCAGGAGAAGTGCAAGCTGGAGCAGACACT
TGAGCAGGAGCAGGAGTGCCTCGTCAACAAGCTTATGCGCAAGATTGAGA
AGCTCCAGGCGGAGACGGACAACAAGCAGACCAATCTCGAGCAGCTGCGC
CGCGAAATGGTCGAGTTGGAGAACACGCTTGAGCAGGAACAGGAAGCTCT
TGTAAACAAGCTGTGGAAGCGCATGGACAAGCTGGAGACCGAGAAGCGTT
CGCTGCAAATCAAGCTGGATCAGCCGGTTTCCGATCCGACTACGCCGCGA
GACATCACAAACAACGCCCATGCCAATGGTGGCGATACGGCCACCAGTTT
GAGTGCTCATATCCAGATTCTGCGCTCCGAAGTGCTTCACTATCGCTCCG
ACCTGGCGAGCGCTCACAACGAAGCCACTATCATAACACAGCAGTATGCG
CAGGAAAAGAATTCCATTCGCGAGGAAACGCTCGCCTTCAGCGCAAGCTA
AAGCACGAGGTGGAGCGCCGCGAATCCCTATGCCCG
MXO04060.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-PD | 1716 | CG6664-RD | 117..937 | 8..828 | 3905 | 99 | Plus |
| CG6664-PA | 1599 | CG6664-RA | 1..820 | 9..828 | 3900 | 99 | Plus |
| CG6664-PB | 1599 | CG6664-RB | 1..820 | 9..828 | 3900 | 99 | Plus |
| CG6664-PC | 1599 | CG6664-RC | 1..820 | 9..828 | 3900 | 99 | Plus |
| CG6664-PD | 1716 | CG6664-RD | 936..994 | 826..884 | 245 | 96.6 | Plus |
| CG6664-PA | 1599 | CG6664-RA | 819..877 | 826..884 | 245 | 96.6 | Plus |
| CG6664-PB | 1599 | CG6664-RB | 819..877 | 826..884 | 245 | 96.6 | Plus |
| CG6664-PC | 1599 | CG6664-RC | 819..877 | 826..884 | 245 | 96.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-RC | 2603 | CG6664-RC | 440..1317 | 8..884 | 4215 | 98.7 | Plus |
| CG6664-RB | 2552 | CG6664-RB | 389..1266 | 8..884 | 4215 | 98.7 | Plus |
| CG6664-RA | 2482 | CG6664-RA | 319..1196 | 8..884 | 4215 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17014235..17014904 | 884..216 | 3150 | 98.4 | Minus |
| 3L | 28110227 | 3L | 17015140..17015257 | 125..8 | 590 | 100 | Minus |
| 3L | 28110227 | 3L | 17014987..17015077 | 215..125 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:03:43 has no hits.
MXO04060.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:08:47 Download gff for
MXO04060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-PD | 113..995 | 1..886 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:33 Download gff for
MXO04060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RB | 385..1267 | 1..886 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:01 Download gff for
MXO04060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RA | 315..1197 | 1..886 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:01 Download gff for
MXO04060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17014233..17014904 | 216..886 | 98 | <- | Minus |
| 3L | 17014987..17015077 | 125..215 | 100 | <- | Minus |
| 3L | 17015141..17015261 | 1..124 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:33 Download gff for
MXO04060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17007333..17008004 | 216..886 | 98 | <- | Minus |
| arm_3L | 17008087..17008177 | 125..215 | 100 | <- | Minus |
| arm_3L | 17008241..17008361 | 1..124 | 97 | | Minus |
