MXO04061.5prime Sequence
722 bp (720 high quality bases) assembled on 2007-07-18
> MXO04061.5prime
CAGTCGACATGTGTGGTTGTTGGAAGGTTTTCTGCCTGCTGGCGCTACTT
TCCCTGGTCGCTTTCAGCGATTCCCTGCGAATTCTGGGTCTGTTTCCGCA
CCCGGCCATCAGTCACTTCAAGTTCTTTCACCCAATCATGCGCGGATTGG
CCGAGGCCGGTCACAGCGTGGATGTCATCAGTCCATTCGAGGACAAGGAC
CCTCCAAACGGATACAAGGACCACCTGCTGCCGCCCTCCACCTTGACAGA
CACTATTAGCTTAGAGGACTTCGAACGGCCCTACAGCTTCCTATTTCACT
ATGTAGAGTTCTTTATCCTGCACAAAATGGGAAGAGAGGACTGCAATACC
ACACTGCACAGCAGAGCCCTAACTGAGATCCTTAAGAATCCTCCTGGCTA
CTACGATGTAATTTTACTGGAGCAATTCAATACTGACTGTGCGATGAGCG
TGGCCCATGTTTTCCAAGCTCCGGTCATTGGAATGAGCAGCTGTGCCCTG
ATGCCATGGCATTATGAACGATTTGGAGCCCCTCTGATCCCATCGTATAT
ATCAGCATTGTTCCAGGGACAATCCCAGGAGATGTCCTTTGCGGGACGAT
TGGGCAACTGGATTACTGTGCACTCCCTCAACTTGCTGTATAAAATGTTT
ACAGTTCCCGCCGGAAACGCCTTGATTCGCCAAAGATTCGGTCCTGGACT
GCCGTCCACGGAGGACTTGGTG
MXO04061.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:08:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17322-PC | 1554 | CG17322-RC | 1..714 | 9..722 | 3570 | 100 | Plus |
| CG17322-PD | 1554 | CG17322-RD | 1..714 | 9..722 | 3570 | 100 | Plus |
| CG17322-PA | 1554 | CG17322-RA | 1..714 | 9..722 | 3570 | 100 | Plus |
| CG17322-PB | 1554 | CG17322-RB | 1..714 | 9..722 | 3570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17322-RB | 1903 | CG17322-RB | 155..868 | 9..722 | 3570 | 100 | Plus |
| CG17322-RA | 1807 | CG17322-RA | 59..772 | 9..722 | 3570 | 100 | Plus |
| CG17322-RD | 1900 | CG17322-RD | 152..865 | 9..722 | 3570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18827508..18827886 | 265..643 | 1895 | 100 | Plus |
| 2L | 23513712 | 2L | 18827002..18827260 | 9..267 | 1295 | 100 | Plus |
| 2L | 23513712 | 2L | 18827946..18828024 | 644..722 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:35:39 has no hits.
MXO04061.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:08:52 Download gff for
MXO04061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17322-PB | 1..714 | 9..722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:13 Download gff for
MXO04061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17322-RD | 145..865 | 1..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:42 Download gff for
MXO04061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17322-RD | 145..865 | 1..722 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:42 Download gff for
MXO04061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18826995..18827259 | 1..266 | 98 | -> | Plus |
| 2L | 18827510..18827886 | 267..643 | 100 | -> | Plus |
| 2L | 18827946..18828024 | 644..722 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:13 Download gff for
MXO04061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18826995..18827259 | 1..266 | 98 | -> | Plus |
| arm_2L | 18827510..18827886 | 267..643 | 100 | -> | Plus |
| arm_2L | 18827946..18828024 | 644..722 | 100 | | Plus |
