MXO04064.5prime Sequence
902 bp (891 high quality bases) assembled on 2007-07-18
> MXO04064.5prime
CAGTCGACATGGAGCTGAACAATGTTACCATCGAGGACGCCACAGATGCT
TCCAAGTCCTACTCTCAAGCAGCTAACACGCCTCCAAGTAATGAGAAACC
CAAGCCGCAACTGCTCTACGCCATCAACGATAATCCCCCATGGTACTTGA
GCATCTTCCTCGCATTCCAGCACTACCTGACCATGATTGGAGCCATTGTT
TCCATACCTTTCATCCTGACGCCGGCGTTGTGCATGTCCGATGAGGACGC
CAACCGGGGCATCATCATCTCTACGATGATCTTCGTCACGGGCATCGTTA
CCTACTTCCAGGCCACGTGGGGCGTCCGTTTGCCCATTGTTCAGGGCGGA
ACTATATCGTTCTTGGTGCCCACCCTTGCCATCTTGGCCCTGCCGCAGTG
GAAGTGCCCGGAGCAAGCCGTAATGGATGCCATGGACGAGGCTGAGCGGG
AGGAACTATGGCAAGTGCGTATGCGGGAGCTATCCGGCGCTATTGCCGTG
TCCGCCATGGTGCAAGTTATCCTGGGCTACACTGGTCTGGTGGGAAAAAT
CCTTAAGTACGTAACTCCANTTGACCATTGTACCCACTGTGTCCCTGGTG
GGTCTTACCCTATTCGAGCACGCAGCTGAAACCGCATCCAAGCATTGGGG
CATTGCTGTGGGAACCACTGGAATGCTGACACTCTTTTCGCAAATAATGT
CGAATGTTCCCGTGCCTATCTTGGCCTACCGCAAGGGTCACGGCTTGGAA
ATTCGCCAGTTCCAGTTGTTCCGCCTCTTTCCCGTCCTGCTGACCATCAT
GATAATGTGGGGTCTGTGCGGAATTCTGACTGCTACGGATGTCTTTCCTC
CGTCACATCCTTCTCGCACCGATGTTCGCCTGAATGTGCTGACCAGTGCA
AA
MXO04064.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:08:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6293-PA | 1722 | CG6293-RA | 1..561 | 9..569 | 2805 | 100 | Plus |
| CG6293-PA | 1722 | CG6293-RA | 562..893 | 571..902 | 1660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6293-RB | 2601 | CG6293-RB | 119..1012 | 8..902 | 4450 | 99.9 | Plus |
| CG6293-RA | 2144 | CG6293-RA | 119..1012 | 8..902 | 4450 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10309899..10310518 | 662..42 | 3055 | 99.8 | Minus |
| 3R | 32079331 | 3R | 10309459..10309699 | 902..662 | 1205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:27:07 has no hits.
MXO04064.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:09:01 Download gff for
MXO04064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-PA | 1..890 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:56 Download gff for
MXO04064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 111..1009 | 1..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:55 Download gff for
MXO04064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 111..1009 | 1..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:55 Download gff for
MXO04064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10309462..10309698 | 663..899 | 100 | <- | Minus |
| 3R | 10309899..10310518 | 42..662 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:56 Download gff for
MXO04064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6135184..6135420 | 663..899 | 100 | <- | Minus |
| arm_3R | 6135621..6136240 | 42..662 | 99 | <- | Minus |
