MXO04067.5prime Sequence
888 bp (572 high quality bases) assembled on 2007-07-18
> MXO04067.5prime
CAGTCGACATGACGAAAGTAACGCCGAAAGGGCGCCCGAAGGCTAAGACG
CCGTACAAACGCTACTTCGACGGCCAAAAGGACACAGAAACGGGCGACGG
CGATCTAAAACATGTAAAAGTGTTCAGCAAAAACCGACAGAATTTCACTG
GCGATTTTATCAGTATGATTAATAAAACGAAGAAGCCGCGTCCCCAAAAG
GCTCCCGCCAAACCCACAAAGGAGGAGCTGGAAGCTAGGCCCAAGAAGAA
CCCGATTCCCAAGGAGATCCTCGACAAGTACTCACGTGGCGAGCAAGTGC
AGCCGAAAGGTGTGAAAACGCGGCACTTCAAGGAGCAGCAGACGCGCAAG
GAGGTCTACCTCGAATACGCCACCGAGCAGGCGGCCCGCACAGAGCTCCT
ACTCCAGGAAACCGCTGGGCAGCTACAGGCAGATGAGGGCGAGACCACCG
CCGAATTTAGACAGTCCCAAATTGCCGAGAATGTGGATATCCAGTCATCG
GCCAAGCACTTCAACCTGAACATGGAATTCGGTCCTTACCGAATGCGCTA
CACCAAGAACGGCAGGCATTTGCTGGCTCGGCGGCAAACGCGGTCATGTG
GCCGCCTTCGATTGGGTGACCAAGCGTCTGCACTGCGAATTCAATGCGAT
GGAGAGCGTCGAGGATGTTCAGTGGCTGCATGTGCCCACCATGTACGCGG
TGGCCCAGAAGAGCTGGGTCTATTTCTACGACAAAAAGGGCACCGAACTG
CATTGCATCAAGCGGCTGAATCGGGTCAATCGCCTGGACTTCCTGCCCTA
CCACTTCCTCCTGGCCGCCGGCAACAGTGCGGGCTATGCTTCCTGGCTGG
ACGTCTCCATTGGCGAGCTGGTGGGTAACTTTAACACG
MXO04067.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2260-PA | 1830 | CG2260-RA | 1..567 | 9..575 | 2835 | 100 | Plus |
| CG2260-PA | 1830 | CG2260-RA | 567..879 | 576..888 | 1565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2260-RA | 2004 | CG2260-RA | 117..995 | 9..888 | 4375 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8120153..8121031 | 888..9 | 4350 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:51:02 has no hits.
MXO04067.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:09:05 Download gff for
MXO04067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2260-PA | 1..879 | 9..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:49 Download gff for
MXO04067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2260-RA | 110..995 | 1..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:42:23 Download gff for
MXO04067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2260-RA | 110..995 | 1..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:23 Download gff for
MXO04067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8120153..8121038 | 1..888 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:49 Download gff for
MXO04067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8014186..8015071 | 1..888 | 99 | | Minus |
