MXO04068.5prime Sequence
579 bp (578 high quality bases) assembled on 2007-07-18
> MXO04068.5prime
CAGTCGACATGGCCAGTCCAGCAGCAGGACCCTCCAAGCAGGAGATCGAG
TCGGTCTTCAGTCGCCTGCGCGCCCAGCCAGCTAACAAATCCTGCTTCGA
CTGCGCTGCCAAGGCTCCCACCTGGTCCTCCGTTACCTATGGCATCTTCA
TTTGCATCGACTGTTCTGCCGTGCACCGCAACTTGGGCGTGCATCTGACC
TTCGTGCGCAGCACCAACCTGGACACCAACTGGACCTGGCTCCAGCTCCG
CCAGATGCAACTGGGCGGCAACGCGAACGCCGCGCAATTCTTCCGCGCCC
ACAACTGCAGCACCACCGACGCCCAGGTCAAGTACAACTCGCGGGCGGCC
CAGCTTTATAGGGACAAGCTGTGTGCCCAGGCCCAGCAGGCCATGAAGAC
GCACGGCACAAAGCTGCATTTGGAACAGACGGACAAGAGCGAGGGCAACG
AAGCCGCTAGGGAGGAGGACTTCTTTGCCCAGTGTGACAATGAGGTGGAC
TTCAATGTCCAGAACAACAATGTCAGTAAGGATCCAAACCCACCCACCGT
TGCTCCGGTCATCAGCGTTGAAACGCAAC
MXO04068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6838-PA | 1659 | CG6838-RA | 1..571 | 9..579 | 2855 | 100 | Plus |
| CG6838-PB | 1659 | CG6838-RB | 1..571 | 9..579 | 2855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ArfGAP3-RC | 2580 | CG6838-RC | 382..956 | 5..579 | 2875 | 100 | Plus |
| ArfGAP3-RB | 2307 | CG6838-RB | 109..683 | 5..579 | 2875 | 100 | Plus |
| ArfGAP3-RA | 2689 | CG6838-RA | 396..970 | 5..579 | 2875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22716569..22716892 | 413..90 | 1620 | 100 | Minus |
| 3L | 28110227 | 3L | 22716297..22716416 | 531..412 | 600 | 100 | Minus |
| 3L | 28110227 | 3L | 22716971..22717055 | 89..5 | 425 | 100 | Minus |
| 3L | 28110227 | 3L | 22716154..22716204 | 579..529 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:51 has no hits.
MXO04068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:09:10 Download gff for
MXO04068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6838-PB | 1..571 | 9..579 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:17 Download gff for
MXO04068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ArfGAP3-RA | 392..970 | 1..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:47 Download gff for
MXO04068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ArfGAP3-RA | 392..970 | 1..579 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:47 Download gff for
MXO04068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22716569..22716892 | 90..413 | 100 | <- | Minus |
| 3L | 22716154..22716202 | 531..579 | 100 | <- | Minus |
| 3L | 22716298..22716414 | 414..530 | 100 | <- | Minus |
| 3L | 22716971..22717059 | 1..89 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:17 Download gff for
MXO04068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22709254..22709302 | 531..579 | 100 | <- | Minus |
| arm_3L | 22709398..22709514 | 414..530 | 100 | <- | Minus |
| arm_3L | 22709669..22709992 | 90..413 | 100 | <- | Minus |
| arm_3L | 22710071..22710159 | 1..89 | 97 | | Minus |
