MXO04070.5prime Sequence
933 bp (858 high quality bases) assembled on 2007-07-18
> MXO04070.5prime
CAGTCGACATGTTACCTGCCCGTGGTCTCCTTATCGGATCATGCTGCCTA
CTGGCTCTACTGATTCATCCTGTGCAGCCGAATCCCATTGCACCCCGGGC
GGAAGTTGCCGCCGAGTTCATCATTCTGCACAACAATGACATGCACGCCC
GATTCGAGCAGACGAGTGTGACCAGTGGCACCTGCTCCAAGGAGGAGGCC
AATACGGATCAGTGCTACGGAGGATTCGCCAGGGTGGCATACGAGGTGCG
AAAGTATCGCAAGGAGGCGGAGGAGGGTGGAACTCCAGTGTTTTATCTCA
ATGCAGGTGACACCTATACCGGAACTGCTTGGTTCACCGTCTATAAGGAC
AAGATCGCCAGTGCTTTCCTCAACAAGCTATCGCCAGATGCTATTTCTCT
GGGCAACCATGAGTTTGATCAGAATGTTGAGGGTTTGGTGCCCTTCCTAA
ATGCCGTGGAATTCCCTGTTTTGGCCTGTAATCTGAACCTCACCGATGTT
CCGGAAATGGCGGCTGCCAAGCAGCTGGCCAACTCGACGATCCTCGAGAG
AAATGGGGTGAAGGTTGGCGTTATCGGTTACCTTACGCCCGATACCAAGG
TGCTTGCCTTTCGGAACAAAGTGGAGTACGAGGAGGAAATCGTGTCCATC
AATGCGGAGGCCGCAAAGCTAAAGGCTCAAGGCATCAATATCATCATCGC
TTTGGGTCACTCTGGATACCAAAAGGATCAGGAGATAGCCATGAACTGCC
CGGAGGTGGACATAGTCATTGGTGGCCATTCGCACACATTCTTAGATGCC
AATCAGCCGGTGGCCGATCCCACGGACTCTGATCCGGAGGCGGTTCGAGG
TCCCTATCCCACCACAGTGGTGCAGGCGAGCGGCAAGAAGGTACCAGTGG
GTCAGGCATACGCGTATACCAAGTATCTCGGAA
MXO04070.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:09:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4827-PA | 1800 | CG4827-RA | 1..925 | 9..933 | 4600 | 99.8 | Plus |
| CG30104-PB | 1758 | CG30104-RB | 703..759 | 723..779 | 160 | 91.2 | Plus |
| CG30104-PA | 1758 | CG30104-RA | 703..759 | 723..779 | 160 | 91.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| veil-RB | 2220 | CG4827-RB | 240..1164 | 9..933 | 4610 | 99.9 | Plus |
| veil-RA | 2021 | CG4827-RA | 41..965 | 9..933 | 4610 | 99.9 | Plus |
| CG43110-RB | 8272 | CG43110-RB | 4906..5186 | 933..653 | 1390 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17480651..17480931 | 653..933 | 1390 | 99.6 | Plus |
| 2R | 25286936 | 2R | 17480332..17480588 | 396..652 | 1285 | 100 | Plus |
| 2R | 25286936 | 2R | 17479824..17480060 | 9..245 | 1185 | 100 | Plus |
| 2R | 25286936 | 2R | 17480117..17480267 | 245..395 | 755 | 100 | Plus |
| 2R | 25286936 | 2R | 17491751..17491873 | 665..787 | 285 | 82.1 | Plus |
| 2R | 25286936 | 2R | 17491022..17491164 | 103..245 | 280 | 79.7 | Plus |
| 2R | 25286936 | 2R | 17491219..17491346 | 249..376 | 235 | 78.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:36:05 has no hits.
MXO04070.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:09:19 Download gff for
MXO04070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4827-PA | 1..923 | 9..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:21 Download gff for
MXO04070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| veil-RA | 34..965 | 1..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:53 Download gff for
MXO04070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| veil-RA | 34..965 | 1..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:53 Download gff for
MXO04070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17479817..17480059 | 1..244 | 98 | -> | Plus |
| 2R | 17480117..17480267 | 245..395 | 100 | -> | Plus |
| 2R | 17480332..17480588 | 396..652 | 100 | -> | Plus |
| 2R | 17480651..17480931 | 653..933 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:21 Download gff for
MXO04070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13367322..13367564 | 1..244 | 98 | -> | Plus |
| arm_2R | 13367622..13367772 | 245..395 | 100 | -> | Plus |
| arm_2R | 13367837..13368093 | 396..652 | 100 | -> | Plus |
| arm_2R | 13368156..13368436 | 653..933 | 99 | | Plus |
