MXO04073.5prime Sequence
555 bp (236 high quality bases) assembled on 2007-07-18
> MXO04073.5prime
CAATCGACTTGTCTGGAAATCCTTTCGACGGCGACTAACATCAGAGCTCG
GCCAGTGGAGAGATACTAGAGGGCTTCCTATGTCCCATTTGCCGTGCGGA
TCTCCAGTCCATCGATGTGCTCGCGGATCATTTTGCCCGCCAGCTTGCGG
AAGAGGAGGATGCCCTAAAATCCTTTAAAGATATCTTTACCTTGGCGAAA
AAGAAGATCCTAAACCCCTTTGAGGATGAAAAAGGTAGCATCTGTATCGT
CGCCCGCAGGTTCCTCCTCTTCAGCGGCTGGCAAGAATCCCAATGGCAAC
GGAGATCGCAATGGACCCAGTAATGCCCGCTCCCGTCTAAATGTATTTAA
CTATATGGCCAGGCAGCAGCCTGGTGCTGAGTGCTCCCACTTCGAGTACT
TTCAGTCCATTCGCAATCCTCGCCTGGAGCGATATGCCAACGAAACAAAC
AAACTAATCATTCATTTGCACCGCCTGCTTATGGATCTGCCAGCGGATTC
TGAGCAGCGGCGTCAGCATGAACAGCAAACAGATGCCTGGCTGGATGGTG
ATTCC
MXO04073.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:09:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8506-PA | 1518 | CG8506-RA | 229..540 | 238..549 | 1410 | 98 | Plus |
| CG8506-PA | 1518 | CG8506-RA | 2..228 | 10..236 | 910 | 96 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbsn-5-RA | 1846 | CG8506-RA | 262..800 | 10..549 | 2450 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8160093..8160631 | 10..549 | 2425 | 97 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:51:05 has no hits.
MXO04073.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:09:30 Download gff for
MXO04073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8506-PA | 2..546 | 10..555 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:50 Download gff for
MXO04073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbsn-5-RA | 259..806 | 6..555 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:42:26 Download gff for
MXO04073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbsn-5-RA | 259..806 | 6..555 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:26 Download gff for
MXO04073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8160090..8160637 | 6..555 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:50 Download gff for
MXO04073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8160090..8160637 | 6..555 | 96 | | Plus |
