MXO04075.5prime Sequence
815 bp (719 high quality bases) assembled on 2007-07-18
> MXO04075.5prime
CAGTCGACATGGTTCGATATATTCCGCTCCTACTCCTGGGAGTGCTGTGC
TCCTGGCCAGCTGCCACTGTGGCCAGTGACCAGGCTTCCCGCATCGTCTG
CTACTTTAGCAACTGGGCCGTGTATCGAACTGGAATCGGTCGCTATGGAT
TGGAGGATGTGCCCGCCGACCTGTGCACCCACATCATCTACTCCTTTATT
GGTGTTAACGATAAGAGCTGGGATGTGCTGGTGATCGATCCTGAGTTGGA
TGTGGATCAGGGTGGCTTCAGCAAGTTTACACAATTGAAGAAATCTAATC
CCAATGTGAAGCTCGAGATAGCAGTGGGTGGCTGGGCGGAAGGTGGCTCC
AAGTACTCACAAATGGTGGCTGTTCGCGATCGCCGGCAAAGTTTCATACG
CAGTGTGGTACGCTTTATGAAGCAGTACAACTTCGATGGATTCGACTTGG
ACTGGGAGTATCCGGGAGCCACGGATCGCGGTGGCAACTATGGGGATAAG
GACAAGTTCCTTTATTTTGTTGAGGAACTGCGACGTGCCTTCGATCGCGA
GGGTCGCGGATGGGAAATCACCATGGNCGGTGCCCGTTGCCAAGTTCCGG
CTGAACGAAGGTTACCACGTTCCGGAATTGTGCGAAGCGCTGGATGCCAT
TCACGCCATGACCTATGACCTGCGAGGAAACTGGGCCGGATTCGCCGATG
TGCACAGTCCACTCTATAAGCGAAAGCACGACCAATACGCCTACGAGAAA
CTGAATGTGAACGACGGCCTTGCGCTGTGGGAGGAGATGGGCTGCCCGGC
CAACAAGCTGGTGGT
MXO04075.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:09:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9307-PA | 1788 | CG9307-RA | 1..568 | 9..576 | 2840 | 100 | Plus |
| CG9307-PA | 1788 | CG9307-RA | 569..806 | 578..815 | 1190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht5-RA | 2122 | CG9307-RA | 131..936 | 9..815 | 4010 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13768091..13768713 | 12..635 | 3070 | 99.8 | Plus |
| 3R | 32079331 | 3R | 13768861..13768984 | 636..759 | 620 | 100 | Plus |
| 3R | 32079331 | 3R | 13769073..13769129 | 759..815 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:14:48 has no hits.
MXO04075.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:09:39 Download gff for
MXO04075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9307-PA | 1..806 | 9..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:51 Download gff for
MXO04075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht5-RA | 122..936 | 1..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:09 Download gff for
MXO04075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht5-RA | 122..936 | 1..815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:09 Download gff for
MXO04075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13768091..13768713 | 12..635 | 99 | -> | Plus |
| 3R | 13768861..13768984 | 636..759 | 100 | -> | Plus |
| 3R | 13769074..13769129 | 760..815 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:51 Download gff for
MXO04075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9593813..9594435 | 12..635 | 99 | -> | Plus |
| arm_3R | 9594583..9594706 | 636..759 | 100 | -> | Plus |
| arm_3R | 9594796..9594851 | 760..815 | 100 | | Plus |
