MXO04076.5prime Sequence
566 bp (565 high quality bases) assembled on 2007-07-18
> MXO04076.5prime
CAGTCGACATGAAGTTCGTGATTTTGCTGTGCGTGCTGAGCGCGTTGCTG
CTGCAAATTGAAGCGTCGCCCCTCCAGCGGCTTTCGAGAAGCGAGCGGGC
TGTTTCCCGCCAACAGACGGTCAACAATGAGGTGGCTCCGGCGGTAGCTC
CTGCCAGCGATGATGACGATGATGACGACGATGAGGACGACGATGATGAG
CCTGATCTAGGAGATCTGATCGATGACGATGATGATGATGATGAGGAGGA
GGACGATGACGAGGACGAGGAGGATGATACGCCCCAGGGTCAGGCTGCTC
CAGCGGCCACTGCCAGCGATGATGACGAAGAGGAAGACGATGATGATGAC
GATTATCTGGACAGGCTGTTCGATGATATCCTGGGCGATGATGAAGATGA
GGATGATGATGACGAGACACCCGCTGCCACCGCCCAGCAGAGCGCTGTGG
CCGCCGCTCCCGCCCAAACTCTGGATGAGGTCGCCCCCGCTGCCGCCTCC
TCCGTGAGCGCCGGTATCTCCGATGGTGTTGATCTGCCCGCCGAGTCCGG
AAATGCCGCTGAGGTC
MXO04076.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:09:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6611-PA | 1746 | ect-RA | 1..558 | 9..566 | 2790 | 100 | Plus |
| CG6611-PC | 852 | ect-RC | 1..558 | 9..566 | 2790 | 100 | Plus |
| CG6611-PB | 1746 | ect-RB | 1..558 | 9..566 | 2790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ect-RE | 1947 | CG6611-RE | 132..691 | 7..566 | 2800 | 100 | Plus |
| ect-RD | 2426 | CG6611-RD | 189..748 | 7..566 | 2800 | 100 | Plus |
| ect-RB | 2046 | CG6611-RB | 132..691 | 7..566 | 2800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10196208..10196435 | 234..7 | 1140 | 100 | Minus |
| 3L | 28110227 | 3L | 10195531..10195710 | 566..387 | 900 | 100 | Minus |
| 3L | 28110227 | 3L | 10195819..10195972 | 387..234 | 770 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:36:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 882..926 | 327..370 | 105 | 76.1 | Plus |
MXO04076.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:09:44 Download gff for
MXO04076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6611-PB | 1..558 | 9..566 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:50 Download gff for
MXO04076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ect-RB | 126..691 | 1..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:30 Download gff for
MXO04076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ect-RB | 126..691 | 1..566 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:30 Download gff for
MXO04076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10195531..10195709 | 388..566 | 100 | <- | Minus |
| 3L | 10195819..10195971 | 235..387 | 100 | <- | Minus |
| 3L | 10196208..10196441 | 1..234 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:50 Download gff for
MXO04076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10188631..10188809 | 388..566 | 100 | <- | Minus |
| arm_3L | 10188919..10189071 | 235..387 | 100 | <- | Minus |
| arm_3L | 10189308..10189541 | 1..234 | 98 | | Minus |
