MXO04077.5prime Sequence
790 bp (708 high quality bases) assembled on 2007-07-18
> MXO04077.5prime
CAGTCGACATGTCCAAGCGTCGAATCGAAGTGGGGGAGACCTACGGCAGC
AAGGCGAAGAAGGACCCGGAGGCGTCCTCCTCGTCGGCGGCAGCCGCTGC
CGGCACAGTGGCTCAAATCCTGGGCGGATTCGTGCCCAACAAGCAACCGC
CCACGATGAACCCGCTGACCAACACGCCGTACTCACAACGGTACCAGAAT
CTCTACAAGAAGCGCATTGCGCTGCCCGTGTTCGAGTACCAGGCGGACTT
TATGCGGCTGCTCAGCCTGCACCAGTGTATTGTGCTGGTGGGCGAGACAG
GCTCCGGCAAGACGACCCAGATCCCGCAGTGGTGCGTGGACTTCGCAGTA
TCCAAGGGGCGCAAGGGAGTCTCCTGCACACAGCCACGTCGAGTTGCCGC
CATGTCCGTGGCCCACCGCGTTTCGGAGGAGATGGACGTAAAACTGGGCG
AAGAGGTCGGCTACTCCATCCGTTTCGAGGACTGCTCCACGGCCAAGACG
CTGCTCAAGTACATGACCGATGGTATGTTGTTGCGCGAGGCCATGTCTGA
TCCCATGCTGGACCAGTACCAGGTCATTCTGCTTGACGAGGCTCACGAGC
GGACCTTGGCCACTGACATTCTAATGGGCGTGCTCAAGGAGGTCATTCGT
CAGCGCAGCGACCTTAAGCTGGTGGTCATGTCCGCCACACTGGACGCCGG
CAAGTTCCAGCAGTATTTCGACAACGCACCGCTCATGAAAGTGCCCGGTC
GCACACATCCCGTGGAGATCTTCTACACGCCCAACCCAAA
MXO04077.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:09:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11107-PA | 2190 | CG11107-RA | 1..774 | 9..782 | 3820 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11107-RB | 2610 | CG11107-RB | 204..978 | 8..782 | 3845 | 99.7 | Plus |
| CG11107-RA | 2747 | CG11107-RA | 341..1115 | 8..782 | 3845 | 99.7 | Plus |
| l(1)G0007-RA | 3880 | CG32604-RA | 1851..2015 | 375..539 | 270 | 77.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7387635..7388355 | 62..782 | 3575 | 99.7 | Plus |
| 2R | 25286936 | 2R | 7387527..7387581 | 8..62 | 275 | 100 | Plus |
| 2L | 23513712 | 2L | 19125754..19125896 | 517..375 | 250 | 78.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:01:18 has no hits.
MXO04077.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:09:49 Download gff for
MXO04077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11107-PA | 1..779 | 9..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:33 Download gff for
MXO04077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11107-RA | 335..1120 | 1..787 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:10 Download gff for
MXO04077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11107-RA | 335..1120 | 1..787 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:10 Download gff for
MXO04077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7387521..7387580 | 1..61 | 93 | -> | Plus |
| 2R | 7387635..7388360 | 62..787 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:33 Download gff for
MXO04077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3275026..3275085 | 1..61 | 93 | -> | Plus |
| arm_2R | 3275140..3275865 | 62..787 | 99 | | Plus |
