MXO04078.5prime Sequence
878 bp (799 high quality bases) assembled on 2007-07-18
> MXO04078.5prime
CAGTCGACATGTTAAAAGGTGGAATGTTATCGCGGTGGAAGATGTGGTCT
CCACAATACAAAATCTTGAGAAATCACCTTATAAATTTCAAGTCGGTGTC
CACATATAAGAACATTTCTGGCGTCAATACCAAGCAGCCCAAATCTCCAC
GACAATTTGGTTGCATGCCACATGTAACTAAGAAAAGAAAATACAAGTAT
GAAGAGGGAAAGACATACCATGGCTTCCAATGCGAACGTGTGGAACACAT
TTCTGAATTTGAACTTACGTCCTATACTTTTCGATATGAGCGCACGGGTA
CAGAATTATGGCATATCGACCGAAATGATTCAAACAACGTATTTTCCATT
AATTTTCGAACCACGCCCTTTGATTCTACTGGTCTACCTCATATTTTAGA
GCATTTATCGTTGTGCGGTTCACAAAAATATCCTGTCAGGGACCCTTTCT
TCAAAATGCTTAACCGCTCGGTAGCGACATTTATGAATGCAATGACTGGT
CCAGATTATACTATTTATCCTTTTTCGACGATGAATGAGATAGATTTTAG
GAATTTGCAACATATTTATTTAGATGCCGTATTCAGACCAAACCTNGGCG
TATTTCGATTTTCTTCAAGAGGGCTGGAGGCTAGAAAACAAAGATATATT
CGATAAACAATCGAAGCTTGTAATCAAAGGAGTTGTTTATAACGAAATGA
AAGGTGCGTTTTCTGAAAACGCGCAGGTATTTAGTCAGAATTTACTCAAT
AATATTTTTCCTGATCACACATATCGACATGTGTCTGGCGGAAATCCATT
GNAAATACCCAAGTTAGCATACAACGATTTAGTTTGAATCCACAAAAAAT
ACTATCATCCAAGTAATGCTCGCATATA
MXO04078.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:09:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3107-PB | 3105 | CG3107-RB | 1..587 | 9..595 | 2935 | 100 | Plus |
| CG3107-PA | 3105 | CG3107-RA | 1..587 | 9..595 | 2935 | 100 | Plus |
| CG3107-PC | 3105 | CG3107-RC | 1..587 | 9..595 | 2935 | 100 | Plus |
| CG3107-PB | 3105 | CG3107-RB | 588..825 | 597..834 | 1171 | 99.5 | Plus |
| CG3107-PA | 3105 | CG3107-RA | 588..825 | 597..834 | 1171 | 99.5 | Plus |
| CG3107-PC | 3105 | CG3107-RC | 588..825 | 597..834 | 1171 | 99.5 | Plus |
| CG3107-PB | 3105 | CG3107-RB | 830..869 | 839..878 | 200 | 100 | Plus |
| CG3107-PA | 3105 | CG3107-RA | 830..869 | 839..878 | 200 | 100 | Plus |
| CG3107-PC | 3105 | CG3107-RC | 830..869 | 839..878 | 200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3107-RD | 3966 | CG3107-RD | 824..1693 | 8..878 | 4274 | 99.5 | Plus |
| CG3107-RC | 3156 | CG3107-RC | 14..883 | 8..878 | 4274 | 99.5 | Plus |
| CG3107-RA | 3230 | CG3107-RA | 88..957 | 8..878 | 4274 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5091898..5092476 | 8..586 | 2895 | 100 | Plus |
| 2R | 25286936 | 2R | 5092525..5092817 | 585..878 | 1364 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:28:37 has no hits.
MXO04078.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:09:54 Download gff for
MXO04078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3107-PB | 1..868 | 9..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:12 Download gff for
MXO04078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3107-RB | 184..1057 | 1..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:33 Download gff for
MXO04078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3107-RA | 83..956 | 1..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:33 Download gff for
MXO04078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5091893..5092476 | 1..586 | 99 | -> | Plus |
| 2R | 5092527..5092816 | 587..877 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:12 Download gff for
MXO04078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 980032..980321 | 587..877 | 98 | | Plus |
| arm_2R | 979398..979981 | 1..586 | 99 | -> | Plus |
