MXO04079.5prime Sequence
564 bp (547 high quality bases) assembled on 2007-07-18
> MXO04079.5prime
CAGTCGACATGGAAATTGAAATTGGCGAACAACCCCAGCCTCCGGTGAAG
TGCTCCAACTTCTTCGCTAACCACTGGAAGGGATTGGTTGTGTTCCTGGT
GCCGCTGCTATGTCTGCCTGTTATGCTGCTAAACGAAGGCGCCGAATTTC
GGTGCATGTACCTCCTTTTGGTAATGGCCATATTTTGGGTTACGGAAGCC
TTGCCTCTCTATGTGACGTCCATGATACCGATTGTGGCCTTCCCAATAAT
GGGTATAATGAGCTCGGATCAGACTTGCCGCTTGTACTTCAAGGATACGC
TGGTGATGTTCATGGGCGGCATTATGGTCGCCCTGGCTGTGGAGTACTGT
AATCTACACAAACGTCTTGCCTTGAGGGTAATCCAGATCGTGGGCTGCAG
TCCCCGCAGATTACACTTTGGCCTCATCATGGTTACAATGTTTTTGAGCA
TGTGGATTTCGAACGCCGCCTGTACTGCCATGATGTGTCCGATTATCCAA
GCCGTGCTGGAGGAGCTGCAGGCTCAGGGTGTCTGCAAAATCAACCATGA
AGCCTCAATACCAA
MXO04079.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3979-PB | 1773 | Indy-RB | 55..596 | 9..550 | 2710 | 100 | Plus |
| CG3979-PC | 1719 | Indy-RC | 1..542 | 9..550 | 2710 | 100 | Plus |
| CG3979-PA | 1719 | Indy-RA | 1..542 | 9..550 | 2710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Indy-RD | 2581 | CG3979-RD | 272..826 | 9..564 | 2755 | 99.8 | Plus |
| Indy-RA | 2484 | CG3979-RA | 175..729 | 9..564 | 2755 | 99.8 | Plus |
| Indy-RC | 2600 | CG3979-RC | 291..845 | 9..564 | 2755 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18831093..18831242 | 409..260 | 750 | 100 | Minus |
| 3L | 28110227 | 3L | 18830875..18831035 | 564..403 | 745 | 98.8 | Minus |
| 3L | 28110227 | 3L | 18831494..18831621 | 144..17 | 640 | 100 | Minus |
| 3L | 28110227 | 3L | 18831311..18831427 | 260..144 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:49:44 has no hits.
MXO04079.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:09:59 Download gff for
MXO04079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3979-PA | 1..553 | 9..562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:43 Download gff for
MXO04079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Indy-RC | 284..843 | 1..562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:14 Download gff for
MXO04079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Indy-RC | 284..843 | 1..562 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:14 Download gff for
MXO04079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18830877..18831028 | 410..562 | 99 | <- | Minus |
| 3L | 18831093..18831241 | 261..409 | 100 | <- | Minus |
| 3L | 18831311..18831427 | 144..260 | 100 | <- | Minus |
| 3L | 18831495..18831628 | 9..143 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:43 Download gff for
MXO04079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18823977..18824128 | 410..562 | 99 | <- | Minus |
| arm_3L | 18824193..18824341 | 261..409 | 100 | <- | Minus |
| arm_3L | 18824411..18824527 | 144..260 | 100 | <- | Minus |
| arm_3L | 18824595..18824728 | 9..143 | 97 | | Minus |
