MXO04080.5prime Sequence
894 bp (551 high quality bases) assembled on 2007-07-18
> MXO04080.5prime
CAGTCGACATGGCTGCGAGATTGATGAACGCCCAGGCACAGGTGTGTCGA
CTGGGCAAGCATGTTGCGTCCGAAGCCACAGTGGTGCGTCAGTTCCACGC
CTCCTGCTACACCGCCTCCAAAGTGGCTCTGTCCAAGTTCGACTCGGACG
TCTACCTGCCGTACGAGAAGCTGAACAAGCGCCTGGAAGTGGTGCGCGGT
CGCTTGAACCGCCCACTGACTCTCTCCGAGAAGGTGCTGTACTCGCATCT
GGACGATCCCGCAAACCAGGACATCGTGCGCGGTACTTCGTACCTGCGTC
TTCGCCCCGATCGTGTGGCTATGCAGGATGCCACTGCACAGATGGCTCTG
CTTCAGTTTATCTCCTCCGGACTGAAAAAGGTGGCTGTGCCCTCCACTGT
TCACTGTGATCATTTAATCGAGGCCCAGATTGGTGGACCCAAGGATTTAG
CCCGTGCCAAGGACCTGAACAAGGAAGTGTACGATTTCTTGGCCAGCACC
TGTGCAAAGTACGGATTGGGCTTCTGGAAGCCAGGCAGCGGAATCATCCA
TCAGATCATTCTGGAGAACTACGCTTTCCCCGGCCTGCTGATGATTGGTA
CTGACTCACACACCCCCAACGGTGGTGGCTTGGGTGGCCTGTGCATTGGC
GTTGGTGGTGCTGATGCCGTCGATGTGATGGCCGACATCCCCTGGGAGCT
GAAGTGCCCCAAGGTGATTGGTGTCAATTTGACTGGCAAGATCAGCGGCT
GGACCTCGCCCAANGATGTTATCCTGAAGGTTGCCGATATCCTGACCGTC
AAGGGAGGCACCGGTGCCATCATTGAGTATCACGGCAAGGGTGTTGACTC
TATCTCTTGTACAGGCATGGCCACCATCTGCAACATGGGTGCTG
MXO04080.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9244-PB | 2364 | Acon-RB | 1..886 | 9..894 | 4411 | 99.8 | Plus |
| CG4706-PA | 2352 | CG4706-RA | 595..647 | 630..682 | 165 | 92.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acon-RF | 3102 | CG9244-RF | 202..1088 | 8..894 | 4424 | 99.9 | Plus |
| Acon-RE | 3022 | CG9244-RE | 121..1007 | 8..894 | 4424 | 99.9 | Plus |
| Acon-RD | 2854 | CG9244-RD | 121..1007 | 8..894 | 4424 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21170188..21171043 | 39..894 | 4269 | 99.9 | Plus |
| 3R | 32079331 | 3R | 11137525..11138110 | 309..894 | 999 | 78 | Plus |
Blast to na_te.dros performed 2014-11-28 22:51:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5965..6050 | 118..33 | 114 | 62.1 | Minus |
MXO04080.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:10:04 Download gff for
MXO04080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9244-PB | 1..886 | 9..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:52 Download gff for
MXO04080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acon-RB | 115..1007 | 1..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:42:28 Download gff for
MXO04080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acon-RD | 115..1007 | 1..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:28 Download gff for
MXO04080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21168765..21168804 | 1..41 | 92 | -> | Plus |
| 2L | 21170191..21171043 | 42..894 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:52 Download gff for
MXO04080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21168765..21168804 | 1..41 | 92 | -> | Plus |
| arm_2L | 21170191..21171043 | 42..894 | 99 | | Plus |
