MXO04081.5prime Sequence
853 bp (757 high quality bases) assembled on 2007-07-18
> MXO04081.5prime
CAGTCGACATGAATGTTCCTCCTAGCGTGGGCAATGGAGGAGCGCCACCG
GGAAGGGGCATAGGCTACACGCCGCCCGGTGCAATCGTGCCGCAGTTTCC
ACCACCCGGATTTGGGGCCCCACCCCCACCGGAGCTGGCCGCCGCCTTCG
GGGTGATGGCCACCAGCACCGAGTGGACGGAGCACAAGGCGCCGGACGGA
CGACCATACTATTACAATCAGAACACGAAGCAAAGCTCGTGGGAGAAGCC
GGAGGCTCTGATGACGCCCGCCGAGCTGCTGCACAACCAGTGTCCCTGGA
AGGAGTATCGCTCGGATACGGGCAAAGTGTACTACCACAACGTGGCCACC
AAGGAGACCTGCTGGGAGCCGCCGCCGGAGTACGTGGATATGAAGGCCAA
GGCGAAGGCGGAAGAAGCTGCTGCAGCCGCCAAAGCCGTAGCAGCCATGA
CATCATCCAGCTTAGCCGGCATGGTGCCACCTGCTGCTCTGGCTAGTATT
CTTCCCGCTGCCCTGCCTGTTGCCCCCCGATTACCGACTCCTGAGATCCA
CTCGCCGCTGACACCCAGCAGCAACGAGAACTCGTCATCAGCGATGGATC
AGGCCATGGCCGCCACGTTAGCGGCTATAGAGGTGCCACAACAAAATGCT
AAGAAGGACGACAAGTCAGAGAGCGCTGTGGTGTTTAAGGATAAACGCGA
GGCCATCGAGTCCTTTAAAGAGCTGCTGCGGGACCGCAATGTGCCATCAA
ATGCGAACTGAGACCAGTGTGTGAAAATCATATCAAAGGATCCGCGATAC
GCAGCCTTCAAAAATCTGAACGAGCGCAAGCAAACATTCAATGCCTACAA
GAC
MXO04081.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:10:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3542-PA | 2421 | CG3542-RA | 1..845 | 9..853 | 4200 | 99.8 | Plus |
| CG3542-PB | 2274 | CG3542-RB | 1..698 | 156..853 | 3465 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3542-RA | 2906 | CG3542-RA | 163..1007 | 9..853 | 4210 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3023388..3023794 | 9..415 | 2035 | 100 | Plus |
| 2L | 23513712 | 2L | 3023854..3024090 | 416..652 | 1170 | 99.6 | Plus |
| 2L | 23513712 | 2L | 3024142..3024347 | 648..853 | 1015 | 99.5 | Plus |
Blast to na_te.dros performed 2014-11-28 20:05:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 1268..1298 | 603..633 | 110 | 83.9 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 2721..2751 | 603..633 | 110 | 83.9 | Plus |
MXO04081.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:10:08 Download gff for
MXO04081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3542-PA | 1..845 | 9..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:09 Download gff for
MXO04081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3542-RA | 156..1007 | 1..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:47 Download gff for
MXO04081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3542-RA | 156..1007 | 1..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:47 Download gff for
MXO04081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3023381..3023794 | 1..415 | 99 | -> | Plus |
| 2L | 3023854..3024086 | 416..648 | 100 | -> | Plus |
| 2L | 3024143..3024347 | 649..853 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:09 Download gff for
MXO04081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3023381..3023794 | 1..415 | 99 | -> | Plus |
| arm_2L | 3023854..3024086 | 416..648 | 100 | -> | Plus |
| arm_2L | 3024143..3024347 | 649..853 | 99 | | Plus |
