MXO04082.5prime Sequence
708 bp (572 high quality bases) assembled on 2007-07-18
> MXO04082.5prime
CAGTCGACATGCTGCACTCCGAATTATTGCCCCCCGCTGGCCACCAGGGC
ATCTATGCTCCACTAAGTCAGGCAATGAGCGATTCTGAATCCGACGAGGA
AATTGAGATCCACAACGCCGCCAATCATCGACAAAAATTGCAACAGAAAC
TTAAGCAAGCTCATCAGCCCAGTCCGCCGGAGCAGCTCCAAGCCCAAAGG
ATACGCATCCCGCCGAACACTCTAGCCCTGAAATCACCACATACGAGAGC
ATCTCCCACGGCCACCAGGATTGTGACTCGAAAACCTTCCGGGAGTACCC
AGAAATTCCAACTGGAGGGCAGTAGCTACGCTACCAATATGCAGAATACT
TTCCGTTCCGTCATGTTGAGCGATAATGGTGGAGTGGGATCGGAGTTGTC
CCACTTCAACAGTGATTTCGATGCGAATGCAGACAATGTAGCCATCTTGG
GGGACCATAATCAGACCGGCGAGGATTTGTCCAAAAGAACCCCCATGTCA
CCGGCAAGGAAATGCTGTTTCATAGGCAGCCTGCTCCTGTGCTTCCTCGC
CGTCGTATCCTTTGTATGGCTGGTGCCCCTGCGGTAATCCTGATGGCACT
GGATCCTGTCCAGCCGTCGGAGACCGGATAAAGACCCACAACTGGTTCAA
TAATTACACAAAGGCGGAACTTAAGGGAGGAATCAATGTGGTCGGTGGTC
TAAGAGCC
MXO04082.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:10:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3618-PA | 2280 | CG3618-RA | 1..570 | 9..578 | 2850 | 100 | Plus |
| CG3618-PA | 2280 | CG3618-RA | 568..699 | 577..708 | 660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3618-RB | 2559 | CG3618-RB | 113..811 | 9..708 | 3475 | 99.9 | Plus |
| CG3618-RA | 2589 | CG3618-RA | 143..841 | 9..708 | 3475 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20815101..20815799 | 708..9 | 3450 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:36:23 has no hits.
MXO04082.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:10:13 Download gff for
MXO04082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-PA | 1..699 | 9..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:26 Download gff for
MXO04082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-RA | 143..841 | 9..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:01 Download gff for
MXO04082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-RA | 143..841 | 9..708 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:01 Download gff for
MXO04082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20815101..20815807 | 1..708 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:26 Download gff for
MXO04082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20808201..20808907 | 1..708 | 99 | | Minus |
