MXO04084.5prime Sequence
921 bp (765 high quality bases) assembled on 2007-07-18
> MXO04084.5prime
CAGTCGACATGCATTCGACCAAGATTAAAGAGGGTGATGACAGAGAGGAG
ATGGAGCTAAATCAAATCTGGCGAGGATGTCGTAAAATCCAGGGCGCCAT
TTTTCGTTATAACTTTGACATCTGCGCCGACTTAAAGCAGCATGATCCCT
GTTGCAGTGGCTTCGTGTCCGAGCCCATTTTCACCGCCGTGCTGGGCAAG
TATCGCAAGGTGGCCGGATTGTCCGAGTCGGAACTCCGGGATGTCACTGA
CTATTTCCAAATTCGAGATGGACGCGTAGCGTATCGTCAGTTCTGCAAGG
TCGTCTGCAGCGAAACACTGCATAAGACCGCCAAAAGTGATCTAGCTACG
GGACTGGAGTGGAACGATCCCTGGCATGTGAATGTTGTACCCCAGCCGGA
GGATCGACGACGTCTCTGCCTGATCCTGCTCAAGATTGCCCAACTATGCA
ATATTCCGCTCATGCCCTACTTTCAGGACTACGAACTAATTGCACAAAAT
GTTGGAGTTGTTACCGTTGCGCACTTTTCTCGTGTGCTGCACTTTATGAA
GATACCACTTTCGGAGTCCGATTTTCTGCTCCTCCTCAGACGCTATATGA
AGGATGGTTACCTGGTCAACTATGTGGCTTTCCTCAAGCACATCGATAAT
ATTATAGCATACCTGGGCGAGCATCATCTGCTGGACAACTCACATGATAT
TATCAAGGACTTTCCGGGACGTTTAGTGGACCTAGAACTTTCCCAACTGC
CAGCTATTGATGGTTGCAAGGCAGTGCATCCAATCTTTCCCGATGCCTGC
AGTACACCCAAAAAGAATCGAAATCAGTGCGACATTCTGTTCTGCATTCA
GAACTACATCTACAAGAACCAAGTGCGCACCTCCGAGTCCTTAGAGTGCT
ATGACAGCCTAAACGTGGGCA
MXO04084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10841-PA | 2187 | CG10841-RA | 1..913 | 9..921 | 4515 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10841-RA | 2406 | CG10841-RA | 121..1033 | 9..921 | 4535 | 99.8 | Plus |
| CG10841-RB | 2403 | CG10841-RB | 121..1030 | 9..921 | 4480 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13633079..13633304 | 696..921 | 1100 | 99.1 | Plus |
| 3R | 32079331 | 3R | 13632811..13633018 | 489..696 | 1040 | 100 | Plus |
| 3R | 32079331 | 3R | 13632578..13632750 | 316..488 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 13632374..13632518 | 171..315 | 725 | 100 | Plus |
| 3R | 32079331 | 3R | 13632175..13632301 | 45..171 | 635 | 100 | Plus |
| 3R | 32079331 | 3R | 13632062..13632098 | 9..45 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:02:41 has no hits.
MXO04084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:10:21 Download gff for
MXO04084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10841-PA | 1..912 | 9..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:25 Download gff for
MXO04084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10841-RA | 121..1032 | 9..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:46 Download gff for
MXO04084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10841-RA | 121..1032 | 9..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:46 Download gff for
MXO04084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13632811..13633017 | 489..695 | 100 | -> | Plus |
| 3R | 13633079..13633303 | 696..920 | 99 | | Plus |
| 3R | 13632062..13632097 | 9..44 | 100 | -> | Plus |
| 3R | 13632175..13632301 | 45..171 | 100 | -> | Plus |
| 3R | 13632375..13632518 | 172..315 | 100 | -> | Plus |
| 3R | 13632578..13632750 | 316..488 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:25 Download gff for
MXO04084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9458801..9459025 | 696..920 | 99 | | Plus |
| arm_3R | 9457897..9458023 | 45..171 | 100 | -> | Plus |
| arm_3R | 9458097..9458240 | 172..315 | 100 | -> | Plus |
| arm_3R | 9458300..9458472 | 316..488 | 100 | -> | Plus |
| arm_3R | 9458533..9458739 | 489..695 | 100 | -> | Plus |
| arm_3R | 9457784..9457819 | 9..44 | 100 | -> | Plus |
