MXO04085.5prime Sequence
722 bp (561 high quality bases) assembled on 2007-07-18
> MXO04085.5prime
CAGTCGACATGAAGTTCAAGGGCATCTTCCTTTGCGTTGCCTTTTTGGCC
CTTCAAGCTAAGTCAGCCCAAGCTGTTTGTGAAAATGAGTCTTGCCATGA
AACCAAGTCAAACATGATCAACATACACTTGGTGCCCCACTCCCACGACG
ATGTGGGCTGGCTGAAGACCGTTGATCAGTACTACTATGGCCACAGGAAT
AACATTCAGCACGCTGGAGTGCAGTACATCATCAACACCGTGATCTCCGA
TCTGATCAAAAACCCCGATCGTCGGTTCATCCAGGTGGAGACATCCTTCT
TCTCCAAATGGTGGAACGAGCAGTCGGAGACCATGAGGGCAGTCGTGAAG
ATGCTGGTGAATGAGGGTCGCCTTCAGTTCATCAATGGACCCTGCAGTAT
GAACGATCAACCTGCCTTATACTACCAGAGTGTGATCGACCAGTTCACAG
TCGGATTGAAGTTCCTCGATGACACTTTTGGAGTTTGTGGTCGTCCTCGT
GTTGGATGGCAAATCGATCCCTTTGGTCACTCCCGTGAGCAAGCCTCTAT
CTACGCTCAGATGGGATTCGATGGCGAGTTCTTTTCCCGCATGGATCACA
ACAACAAAAGCAGGCAGATGAACGATCTGGCTCTAGAAATGATTTGGGAT
GCCAGTGAATCGTTTGAGCCAAGTCAAGCTCTTCACTGGACTCCTGTACA
CCTTCTAACTGGGACACTCCCG
MXO04085.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:10:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9466-PA | 2949 | CG9466-RA | 77..656 | 85..664 | 2550 | 97.5 | Plus |
| CG9468-PA | 3024 | CG9468-RA | 95..228 | 100..233 | 320 | 89.5 | Plus |
| CG9466-PA | 2949 | CG9466-RA | 1..73 | 9..81 | 290 | 95.8 | Plus |
| CG9466-PA | 2949 | CG9466-RA | 655..698 | 664..707 | 220 | 100 | Plus |
| CG9468-PA | 3024 | CG9468-RA | 502..594 | 507..599 | 190 | 88.1 | Plus |
| CG6206-PA | 3243 | CG6206-RA | 514..560 | 492..538 | 160 | 93.6 | Plus |
| CG6206-PB | 3243 | CG6206-RB | 514..560 | 492..538 | 160 | 93.6 | Plus |
| CG6206-PA | 3243 | CG6206-RA | 169..213 | 147..191 | 150 | 93.3 | Plus |
| CG6206-PB | 3243 | CG6206-RB | 169..213 | 147..191 | 150 | 93.3 | Plus |
| CG9465-PA | 2829 | CG9465-RA | 25..67 | 138..180 | 140 | 93 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9466-RB | 3074 | CG9466-RB | 68..779 | 9..722 | 3220 | 96.9 | Plus |
| CG9466-RA | 3063 | CG9466-RA | 68..779 | 9..722 | 3220 | 96.9 | Plus |
| CG9468-RA | 3160 | CG9468-RA | 161..759 | 100..699 | 1085 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8775681..8776055 | 462..88 | 1740 | 97.6 | Minus |
| 2L | 23513712 | 2L | 8775364..8775623 | 722..461 | 1135 | 97.3 | Minus |
| 2L | 23513712 | 2L | 8780484..8780846 | 462..100 | 780 | 81 | Minus |
| 2L | 23513712 | 2L | 8768175..8768521 | 445..99 | 430 | 74.9 | Minus |
| 2L | 23513712 | 2L | 8780221..8780393 | 664..492 | 325 | 79.2 | Minus |
| 2L | 23513712 | 2L | 8771568..8771769 | 662..461 | 320 | 77.2 | Minus |
| 2L | 23513712 | 2L | 8776124..8776196 | 81..9 | 320 | 95.9 | Minus |
| 2L | 23513712 | 2L | 8771951..8772176 | 336..111 | 305 | 75.7 | Minus |
| 2L | 23513712 | 2L | 8767960..8768089 | 598..469 | 260 | 80 | Minus |
| 2L | 23513712 | 2L | 10458451..10458591 | 93..233 | 255 | 78.7 | Plus |
| 2L | 23513712 | 2L | 10455694..10455826 | 242..110 | 215 | 77.4 | Minus |
| 2L | 23513712 | 2L | 10458888..10459002 | 469..583 | 215 | 79.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:09:02 has no hits.
MXO04085.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:10:26 Download gff for
MXO04085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9466-PA | 1..712 | 9..722 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:00 Download gff for
MXO04085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9466-RA | 68..779 | 9..722 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:43 Download gff for
MXO04085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9466-RA | 68..779 | 9..722 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:43 Download gff for
MXO04085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8775364..8775623 | 461..722 | 97 | <- | Minus |
| 2L | 8775683..8776053 | 90..460 | 97 | <- | Minus |
| 2L | 8776116..8776196 | 9..89 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:00 Download gff for
MXO04085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8775364..8775623 | 461..722 | 97 | <- | Minus |
| arm_2L | 8775683..8776053 | 90..460 | 97 | <- | Minus |
| arm_2L | 8776116..8776196 | 9..89 | 92 | | Minus |
