MXO04086.5prime Sequence
736 bp (733 high quality bases) assembled on 2007-07-18
> MXO04086.5prime
CAGTCGACATGGACGAATCCTCGAGAAAGCACATGGAGGACTGCTTCCTA
CGCAGTCCCAGCGACATCCGTACCACCAACGTGCCCGCGGCGCCTAAATC
GCAGGCGGCTGACAACAAGTCTCGGAAAACGGAGCTCCACGTCCTTCGGC
TCAACGATGAATCCCGCCAGATGACCATGGACACGCTGCGCCAAATCCAC
GGCCCGGAATTCCAGCTGGACGACATCAGCAAGTACAAGGATCGTGGACG
CGGAGGTCATGGCGTGAAGCACTCCTACTGGCAGGATCGCGGCACCCTGG
TGGTGCAGAGTGTCCAGGGCGTGAGCTCAACGCGTGGCAACGACAGTGAT
GGTGATCGCCTGCGCCGATATGCCTTGGCCAAACTGGAGAACTACGGATT
TCAGGCTGTCCACTGCCTTGAAGCTTATGAGCACTGCTCCGGCGACACGG
AAGCCGCTCTACTGCTGCTCTACCGTCGCTATATGAGAATTCCCGATGAG
GAGCAACTGACTCTCGAGCCACCCAGCGAGCAAGAAATACTGGACATGCG
CGCCGACGAGAAGGAGGCCCTGGAGTCCATCTTCGATAAGGCGTACGAGG
AGCGCGAGGCGAATCGCGTGTGGAACCTAAAGTTTCGCATCGACCATCTG
CTGGCCCACAGTCCGTCGGAGGTGCGAAAGGCCAGGGAGGCGGTCCTGGC
CGCCGCTGCTGCTGCTGCCCAGGCGGCGCTCGACAA
MXO04086.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:10:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1582-PA | 3867 | CG1582-RA | 1..728 | 9..736 | 3640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1582-RB | 4184 | CG1582-RB | 45..780 | 1..736 | 3650 | 99.7 | Plus |
| CG1582-RA | 4036 | CG1582-RA | 104..839 | 1..736 | 3650 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10898404..10899063 | 736..77 | 3300 | 100 | Minus |
| X | 23542271 | X | 10899124..10899199 | 76..1 | 350 | 97.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:05:33 has no hits.
MXO04086.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:10:31 Download gff for
MXO04086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1582-PA | 1..726 | 9..734 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:16 Download gff for
MXO04086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1582-RA | 104..837 | 1..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:56 Download gff for
MXO04086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1582-RA | 104..837 | 1..734 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:56 Download gff for
MXO04086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10898406..10899063 | 77..734 | 100 | <- | Minus |
| X | 10899124..10899199 | 1..76 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:16 Download gff for
MXO04086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10792439..10793096 | 77..734 | 100 | <- | Minus |
| arm_X | 10793157..10793232 | 1..76 | 97 | | Minus |
