MXO04088.5prime Sequence
836 bp (808 high quality bases) assembled on 2007-07-18
> MXO04088.5prime
CAGTCGACATGTGGTTCGTGAAAATGATTTCAACAGAAGCGAGTTTTCCA
CTTGGCTTCATCCTAACGAGCTTGCTATTGGCATTTCCCGGTTGCCGAGG
AGAGAGAACGAATGTGGGTCTCGTCTATGAGAACACCGATCCGGATCTCG
AGAAGATCTTCCACCTGGCCATCAGCAAGGCGAATGAGGAGAATGAGGAT
CTGCAACTGCACGGCGTGTCCGTCTCCATTGAGCCGGGAAACTCCTTCGA
AACCTCCAAGAAGCTCTGCAAAATGCTAAGGCAAAATCTGGTGGCAGTTT
TCGGACCCACCTCGAATCTGGCCGCCCGTCACGCGATGAGCATCTGCGAC
GCCAAGGAGCTGCCATTTTTGGACACGCGCTGGGATTTTGGGGCCCAGCT
GCCGACCATCAATCTGCACCCACATCCAGCCACGCTGGGCGTGGCCCTGC
GGGATATGGTGGTGGCCCTGGGCTGGGAGAGCTTCACCATTATCTACGAG
TCGGGCGAGTACTTGCCCACCGTGCGAGAGCTGCTGCAGATGTACGGCAC
CGCTGGTCCCACGGTCACGGTCCGTCGCTATGAGCTGGATCTGAACGGCA
ACTACCGGAATGTACTGCGGCGTATACGCAATGCGGATGATTTCTCGTTT
GTGGTTGTCGGATCCATGGCCACTCTGCCAGAGTTCTTNCAGCAAGCCCA
GCAGGTGGGTCTGGTGACCAGCGACTACCGCTATATTATCGGCAACCTGG
ACTGGCACACCATGGACCTGGAGCCGTACCAACACGCCGGAACCAACATC
ACGGGTCTGCGCCTCGTCTCTCCGGATAGCGAACAG
MXO04088.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:10:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5621-PB | 2871 | CG5621-RB | 1..828 | 9..836 | 4096 | 99.7 | Plus |
| CG5621-PA | 2469 | CG5621-RA | 1..828 | 9..836 | 4096 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5621-RD | 3008 | CG5621-RD | 161..988 | 9..836 | 4114 | 99.8 | Plus |
| CG5621-RC | 3011 | CG5621-RC | 161..988 | 9..836 | 4114 | 99.8 | Plus |
| CG5621-RA | 3640 | CG5621-RA | 161..988 | 9..836 | 4114 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20902687..20903242 | 281..836 | 2754 | 99.6 | Plus |
| 3R | 32079331 | 3R | 20902424..20902588 | 117..281 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 20902116..20902226 | 9..119 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:28:50 has no hits.
MXO04088.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:10:40 Download gff for
MXO04088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5621-PA | 1..828 | 9..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:13 Download gff for
MXO04088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5621-RA | 156..988 | 1..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:38 Download gff for
MXO04088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5621-RA | 156..988 | 1..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:38 Download gff for
MXO04088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20902111..20902224 | 1..117 | 96 | -> | Plus |
| 3R | 20902425..20902588 | 118..281 | 100 | -> | Plus |
| 3R | 20902688..20903242 | 282..836 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:13 Download gff for
MXO04088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16727833..16727946 | 1..117 | 96 | -> | Plus |
| arm_3R | 16728147..16728310 | 118..281 | 100 | -> | Plus |
| arm_3R | 16728410..16728964 | 282..836 | 99 | | Plus |
