MXO04091.5prime Sequence
718 bp (709 high quality bases) assembled on 2007-07-18
> MXO04091.5prime
CAGTCGACATGTGGATATCCGTGAACCTGTGGGGAATAGCTCGATTGCAG
TGTTTTCTAAAGACGCCTCAGGCTGCGTTGGAGAAGAGTACAAGCAAATC
GTTCGAAGAGGACCTGGACACGCCCTCGTACGACTATCAGAATATGTCCA
TGCTTCGTTCCAGTGTGCTCCGCATCTGGATGCAGCTGTGGCGTGGTGAC
AGTGAACTCCTGCCGCGCTCAGCCAATCTGGTACAGGTGCTGGGGTCCAT
TTCGGCGCTGTGCTGCGTGGACAAGAAAGGTATCCTGTCGTGGCCCAATC
CCACCGCCGAAAAGGTATTCTTCCTGCACAACACAGACGAGGAGGCTCGC
GAGGATGGAGCAGGCAGTCAGTCTTCTTCACAGAGCGAGAGCGACGACGT
ACCGGTTGTGGATGAGGACCACAAGGAGCGCGGAATAGTGGCTGAAGTGC
TGGACCTCACGCACGACCAACACTGCCCCTTTCGGCTGGAGTTCGACGAT
CACGAATGGAAGGCGCACATCAAGTCCTTGAAGCCACTGGGTCTTGCCAT
TCTGCTAAACACCTGTTCTCCACTCACCCACGAGCACTACGCACAGTTCT
GCGGTCATGTAACCGCGGTGGCTATGCTCGACAAAGATCTGGTACCTGTG
ACTAATCGGTATGCGTATGCACTCATTGAGTCCAGTAAAAAGCTTTTTGC
ATGGACGCTGCCTTTGCG
MXO04091.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:10:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3054-PA | 4350 | l(2)k05819-RA | 969..1651 | 8..690 | 3365 | 99.7 | Plus |
| CG3054-PB | 3381 | l(2)k05819-RB | 1..682 | 9..690 | 3360 | 99.7 | Plus |
| CG3054-PA | 4350 | l(2)k05819-RA | 1648..1678 | 688..718 | 155 | 100 | Plus |
| CG3054-PB | 3381 | l(2)k05819-RB | 679..709 | 688..718 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)k05819-RA | 4864 | CG3054-RA | 1111..1820 | 8..718 | 3500 | 99.6 | Plus |
| l(2)k05819-RD | 5201 | CG3054-RD | 1111..1761 | 8..658 | 3225 | 99.7 | Plus |
| l(2)k05819-RC | 4819 | CG3054-RC | 1111..1761 | 8..658 | 3225 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4395418..4395952 | 8..542 | 2645 | 99.6 | Plus |
| 2L | 23513712 | 2L | 4396009..4396172 | 540..704 | 775 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:51:13 has no hits.
MXO04091.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:10:49 Download gff for
MXO04091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3054-PA | 964..1678 | 1..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:53 Download gff for
MXO04091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k05819-RA | 1106..1820 | 1..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:42:29 Download gff for
MXO04091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k05819-RA | 1106..1820 | 1..718 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:29 Download gff for
MXO04091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4395413..4395950 | 1..540 | 98 | -> | Plus |
| 2L | 4396010..4396172 | 541..704 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:53 Download gff for
MXO04091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4395413..4395950 | 1..540 | 98 | -> | Plus |
| arm_2L | 4396010..4396172 | 541..704 | 99 | -> | Plus |
