MXO04092.5prime Sequence
940 bp (602 high quality bases) assembled on 2007-07-18
> MXO04092.5prime
CAGTCGACATGGAGAAGTACGAGTGCAAGCCAGAGCCGGTGGAGAAGAAG
GAGAAGCCGGTGGAAGAGCTAATGAACTGGGATGCCTACTACAAGAACCG
CGGATTGGTCAGCACCCGATTGGGCAGCTGCAAAGCGGACTACATGCACT
GCTCCACGTACCAGGAGAAGGGTAATGCCCAGGAGAAGGACAAGAAGGGT
AAGGGCGCGTGCTGTTGCTCCTCCTGTCCGGTTCGAAACCGGGAAGAGGT
ATACCAGCCCAGGTGCCCGGCTCCCGGCCAGAAGGGCAAGCCCAACAGGG
ACTACATGCGCTGCTTTGCCGCCAAACTGATCGTTCAGAAGCTCAACATG
CCCGGTAGGGACTTCGAATGCCAGGATAAGCTGCAGATTAAGGCAAACGT
GTGCCGCGGGTGCAAGATCTGCCTTGGTTCCAGCAGCATCAATGTCAACT
GTCTTCCACTGAATCCGGACAAGACATTCCAGATGGAAGCCGAGTGCCTG
CAGAGGCAGCTGGCCGAAGGCATAAACATATCCGTGGTCTATCTGCGCAA
GGAGATCGCACGAGGCTGCTATTTTCCACCCGCGGCGGTGGTCAGTCGCA
TGATCAACGATTTTGACGAGATTGTGCACGATGCGAATGTGGAGCTAACC
TGCAAGGGATGCACCGTCGGCATTATGAACATCCGCTTCGCCATGCAGAT
GCGCTGCCAGACCCTCAAAGAAGATGCGGTCGATGGACGATTGGCGGGCG
GCCAGGAGCGGGGGTGTTTTCCGAACATGAATGTGGATCTCCAGGACCTC
TCCTTCATGTCCACCTCTTCCATTGATCCGTGTGTGGGTTTCATGCCCAG
TGATACGGAGGTAGCGCAGGATTCCCCTCTTGCAGTGAGGATAGGGCGCA
GGATTCTTTTCAATGTCAGGATTCCCCACCTCGCCTGATC
MXO04092.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:10:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31025-PA | 2997 | CG31025-RA | 1..871 | 9..879 | 4355 | 100 | Plus |
| CG31025-PB | 2229 | CG31025-RB | 1..103 | 777..879 | 515 | 100 | Plus |
| CG31025-PA | 2997 | CG31025-RA | 872..933 | 879..940 | 310 | 100 | Plus |
| CG31025-PB | 2229 | CG31025-RB | 104..165 | 879..940 | 310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppi1-RA | 3310 | CG31025-RA | 182..1114 | 9..940 | 4640 | 99.9 | Plus |
| Ppi1-RB | 3376 | CG31025-RB | 182..894 | 9..721 | 3565 | 100 | Plus |
| Ppi1-RB | 3376 | CG31025-RB | 961..1180 | 722..940 | 1075 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30128389..30128938 | 558..9 | 2750 | 100 | Minus |
| 3R | 32079331 | 3R | 30127900..30128099 | 920..722 | 950 | 99.5 | Minus |
| 3R | 32079331 | 3R | 30128166..30128329 | 721..558 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:03:47 has no hits.
MXO04092.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:10:54 Download gff for
MXO04092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31025-PA | 1..933 | 9..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:35 Download gff for
MXO04092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppi1-RA | 178..1114 | 1..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:03 Download gff for
MXO04092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppi1-RA | 178..1114 | 1..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:03 Download gff for
MXO04092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30128166..30128328 | 559..721 | 100 | <- | Minus |
| 3R | 30127829..30127849 | 920..940 | 100 | <- | Minus |
| 3R | 30127901..30128099 | 722..919 | 99 | <- | Minus |
| 3R | 30128389..30128942 | 1..558 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:35 Download gff for
MXO04092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25953551..25953571 | 920..940 | 100 | <- | Minus |
| arm_3R | 25953623..25953821 | 722..919 | 99 | <- | Minus |
| arm_3R | 25953888..25954050 | 559..721 | 100 | <- | Minus |
| arm_3R | 25954111..25954664 | 1..558 | 99 | | Minus |
