MXO04094.5prime Sequence
853 bp (740 high quality bases) assembled on 2007-07-18
> MXO04094.5prime
CAGTCGACATGGCCTCTCCAGCGAATCCATCGAGCAATCACAAAATGAAC
GGAAATGGTAAAATCTACTGCGAGGGCAATCTGCTGCACACCATCCAAAC
GGCAGTGCCCAAACTATTTGCGGATTCGAAAACGTTTGTGGACATGAAGC
TGAACAATTCGCCCGACAAGACCCTCGAGGACTTTAATGCCATGATGGAG
GCCAAGAATCAGACGCCAAGCAGTGAGGATCTCAAGCAGTTTGTCGATAA
GTACTTCAGTGCACCGGGCACCGAGCTTGAGAAATGGACGCCCACCGACT
GGAAGGAGAATCCCAGTTTCCTCGACCTGATCTCCGACCCAGATCTGAAG
CAATGGGGCGTCGAGCTGAATAGCATTTGGAAGGACTTGGGACGCAAAAT
GAAGGACGAGGTGTCAAAGAATCCCGAATACTACTCAATCATTCCCGTGC
CAAATCCAGTGATCGTGCCCGGCGGTCGTTTCATTGAGTTCTACTACTGG
GACTCCTACTGGATCATCCGTGGACTTCTCTACAGCCAGATGTTTGACAC
CGCGCGCGGCATGATTGAGAACTTCTTTTCCATTGTCAATCGGTTCGGTT
TTATTCCAAACGGCGGTCGAGTCTACTACCACGGTCGCTCCCAGCCGCCA
CTTCTAACCGGTATGGTCAAGTCGTACGTGGACTTCACCAACGATGACAA
GTTCGCCATCGATGCCCTGGACACGCTGGAGCACGAGTTCGAGTTCTTTG
TGAACAACCACAATGTCACGGTGAAGAATCACAGCCTGTGTGTGTACCGC
GATTCGTCGTCCGGACCGCGACCAGAATCCTACCGAGAGGATGTGGAGAC
CGG
MXO04094.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:11:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9364-PE | 1683 | Treh-RE | 1..845 | 9..853 | 4225 | 100 | Plus |
| CG9364-PD | 1683 | Treh-RD | 1..845 | 9..853 | 4225 | 100 | Plus |
| CG9364-PA | 1683 | Treh-RA | 1..845 | 9..853 | 4225 | 100 | Plus |
| CG9364-PC | 1791 | Treh-RC | 158..953 | 58..853 | 3980 | 100 | Plus |
| CG9364-PF | 1791 | Treh-RF | 158..953 | 58..853 | 3980 | 100 | Plus |
| CG9364-PB | 1548 | Treh-RB | 1..710 | 144..853 | 3550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Treh-RG | 2991 | CG9364-RG | 484..1328 | 9..853 | 4225 | 100 | Plus |
| Treh-RA | 2758 | CG9364-RA | 251..1095 | 9..853 | 4225 | 100 | Plus |
| Treh-RD | 2992 | CG9364-RD | 485..1329 | 9..853 | 4225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21085448..21086052 | 249..853 | 3025 | 100 | Plus |
| 2R | 25286936 | 2R | 21085197..21085387 | 58..248 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 21077090..21077139 | 9..58 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:51:21 has no hits.
MXO04094.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:11:05 Download gff for
MXO04094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9364-PA | 1..845 | 9..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:58 Download gff for
MXO04094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Treh-RD | 479..1329 | 1..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:42:33 Download gff for
MXO04094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Treh-RD | 479..1329 | 1..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:33 Download gff for
MXO04094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21077084..21077139 | 1..58 | 93 | -> | Plus |
| 2R | 21085198..21085387 | 59..248 | 100 | -> | Plus |
| 2R | 21085448..21086052 | 249..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:58 Download gff for
MXO04094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16964589..16964644 | 1..58 | 93 | -> | Plus |
| arm_2R | 16972703..16972892 | 59..248 | 100 | -> | Plus |
| arm_2R | 16972953..16973557 | 249..853 | 100 | | Plus |
