MXO04095.5prime Sequence
746 bp (609 high quality bases) assembled on 2007-07-18
> MXO04095.5prime
CAGTCGACATGACACAGCGTTTCGATGACTGCGAACAAGTGATCACCGAT
GGCAGGCGAAACTTCGACAGCGAAATCCTTTCACCGCCCGGCAATGACGA
AATCAAGGAGGATCAATGGATGGGCGTTACGGTGCGTTCGAATCCCCTAC
AGGCCAACGGATCCGGCGGAAAGGTAATCGTCTGCGCCCATCGCTATATG
TACATCGTCCGAGAGAATCGTTATGGACAGGGTCTCTGCTATCTCCTAAC
GAACGATCTGCAATTCGAAGAGGTCCACGAGCCCTGCAAAGGACGACCTG
TGCAAAGGCAACACGAAGATTATGGACTGTGCCAGGCGGGCACATCGGCT
GCCCTACTGGACGATGACACCATGGTGTTGGGTTCCCCTGGACCGTACAC
ATGGCGCGGATCCATTTGGGTGACTCAGGTGGGCGGGGAGTACCTGCAGC
GCGACAAGACGACCTACTACAGTGATCATTCGGACTTGAATTCGCCGGTG
GACAAGTACAGCTATCTTGGTATGTCGGTGACCGGTGGCAGATTCTTTGG
TCACATGTCATATGCGGCTGGAGCTCCACAATCCGAGGGTCATGGACAGG
TGGTGATTTTCGACAAGTCCACCGATAATCCAATACCGGTGCACTCAATC
CTGGATGGAGAGCAATTCGGTTCGAGTTTTGGCTATGAACTGGCAACCGC
CAAAATAAACGGAGATCACAGGCCGGATTTAATAGTGGCACCTCCT
MXO04095.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:11:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1771-PA | 3150 | mew-RA | 1..738 | 9..746 | 3540 | 99.1 | Plus |
| CG1771-PB | 3441 | mew-RB | 292..1029 | 9..746 | 3540 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mew-RE | 3863 | CG1771-RE | 253..990 | 9..746 | 3600 | 99.2 | Plus |
| mew-RF | 4254 | CG1771-RF | 644..1381 | 9..746 | 3600 | 99.2 | Plus |
| mew-RB | 5001 | CG1771-RB | 644..1381 | 9..746 | 3600 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13218226..13218666 | 746..306 | 2115 | 98.6 | Minus |
| X | 23542271 | X | 13219747..13219883 | 308..172 | 685 | 100 | Minus |
| X | 23542271 | X | 13220030..13220146 | 177..61 | 585 | 100 | Minus |
| X | 23542271 | X | 13224984..13225035 | 60..9 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:02:47 has no hits.
MXO04095.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:11:10 Download gff for
MXO04095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1771-PB | 285..1029 | 1..746 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:28 Download gff for
MXO04095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mew-RB | 637..1381 | 1..746 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:49 Download gff for
MXO04095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mew-RB | 637..1381 | 1..746 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:49 Download gff for
MXO04095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13220034..13220146 | 61..173 | 100 | <- | Minus |
| X | 13224984..13225040 | 1..60 | 93 | | Minus |
| X | 13218226..13218664 | 308..746 | 98 | <- | Minus |
| X | 13219748..13219881 | 174..307 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:28 Download gff for
MXO04095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13112259..13112697 | 308..746 | 98 | <- | Minus |
| arm_X | 13113781..13113914 | 174..307 | 100 | <- | Minus |
| arm_X | 13114067..13114179 | 61..173 | 100 | <- | Minus |
| arm_X | 13119017..13119073 | 1..60 | 93 | | Minus |
