MXO04101.5prime Sequence
728 bp (635 high quality bases) assembled on 2007-07-18
> MXO04101.5prime
ACCATAAGGGGCGCTCCCAGTCGGGATCGCGCTTAAGCGGCACCTTTAGG
GGGTCGGCACCCGCTACATCGAGGTGTACCGGGCATCGGGGGAGGATTTT
CTGGCCATTGCCGGCGGAGCCTCCAATGAGGCGCAAGCCTTCCTTTCGAA
GGGCGCCCAGGTGATCATTCGCATGCGGGGATTACCATACGACGCCACCG
CCAAGCAAGTGCTGGACTTCTTCACCACTGGGGATACTCCGCCCTGCCAT
GTTCTTGACGGGAATGAGGGCGTGCTGTTCGTTAAGAAGCCGGATGGACG
GGCCACGGGTGATGCCTTCGTGCTATTCGCAAACGAGACGGATGCGCCCA
AGGCGCTGGGCCGGCACCGTGAATCCATTGGGCAGCGGTACATTGAGCTA
TTCCGTTCCACGACCGCCGAGGTGCAGCAGGTGCTCAACCGGTCGATGGA
CCCCAAGAACTATGAGTCGGGCGGTGGGCACAGCCAGCCGCCGTTGATTG
CCCAACTGCCCACGATGCAGCTGCCGCTGCTGCCGCAGGTGGGTGCCCAC
AGCCTCAGCCACAGCCTCGGAGCCAGCCCCGCTAACCTGTGCCCCCCCGT
GCCACCTCCCGCTCTCCCTCTCCCCACACAGCACCTCATCCCCTCTTTGC
ACCACCAAGAACTGCATCCGACTGCGCGGACTGCCCTACGAGGCGATGGT
CAAGCACATTCTGCATTTCCTCGATGAC
MXO04101.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:11:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8205-PE | 2904 | fus-RE | 1031..1617 | 54..640 | 2935 | 100 | Plus |
| CG8205-PB | 1902 | fus-RB | 29..615 | 54..640 | 2935 | 100 | Plus |
| CG8205-PA | 1674 | fus-RA | 29..615 | 54..640 | 2935 | 100 | Plus |
| CG8205-PF | 2904 | fus-RF | 1031..1617 | 54..640 | 2935 | 100 | Plus |
| CG8205-PD | 2904 | fus-RD | 1031..1617 | 54..640 | 2935 | 100 | Plus |
| CG8205-PC | 2676 | fus-RC | 1031..1617 | 54..640 | 2935 | 100 | Plus |
| CG8205-PE | 2904 | fus-RE | 1625..1704 | 649..728 | 375 | 98.7 | Plus |
| CG8205-PB | 1902 | fus-RB | 623..702 | 649..728 | 375 | 98.7 | Plus |
| CG8205-PA | 1674 | fus-RA | 623..702 | 649..728 | 375 | 98.7 | Plus |
| CG8205-PF | 2904 | fus-RF | 1625..1704 | 649..728 | 375 | 98.7 | Plus |
| CG8205-PD | 2904 | fus-RD | 1625..1704 | 649..728 | 375 | 98.7 | Plus |
| CG8205-PC | 2676 | fus-RC | 1625..1704 | 649..728 | 375 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fus-RC | 3671 | CG8205-RC | 1377..2050 | 54..728 | 3290 | 99.3 | Plus |
| fus-RD | 5256 | CG8205-RD | 1377..2050 | 54..728 | 3290 | 99.3 | Plus |
| fus-RF | 5243 | CG8205-RF | 1364..2037 | 54..728 | 3290 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15663283..15663799 | 728..211 | 2480 | 99 | Minus |
| 2R | 25286936 | 2R | 15663919..15664076 | 211..54 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:36:33 has no hits.
MXO04101.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:11:15 Download gff for
MXO04101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8205-PD | 999..1704 | 22..728 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:29 Download gff for
MXO04101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RF | 1332..2037 | 22..728 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:06 Download gff for
MXO04101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RF | 1332..2037 | 22..728 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:06 Download gff for
MXO04101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15663283..15663798 | 212..728 | 99 | <- | Minus |
| 2R | 15663919..15664108 | 22..211 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:29 Download gff for
MXO04101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11550788..11551303 | 212..728 | 99 | <- | Minus |
| arm_2R | 11551424..11551613 | 22..211 | 93 | | Minus |
