MXO04105.5prime Sequence
868 bp (789 high quality bases) assembled on 2007-07-18
> MXO04105.5prime
TTTTAGGGCGTTATCAGTCGACATGACGGNCAATTTGTTACACCTGAACG
TGGACACGCTGTTTGAGCAGCACAGCGTGTCCGAGATAGACGAGGTGCAC
AAAAAGATCCAGTCGGTGGTGGAGAACAAGCGCGAGGAGTTGCGCACTCA
TGTCGGGGAGCGGTACCGAGATCTTTTGCAGGCGGCTGACACCATTGCTG
CGATGCAAACGTCGGCCGGGACACTTATGGAGCAAGTGCGACACGTGCAG
GCCAATTGCCGCAGTCTAAACGAGCAGCAGCTCCTGGGCTTCCAGTCAAC
TGCCAATGCAAGTGCTAAAGATGCCGCACTGAAGGAGAGGAACGCCGGAA
AAAAGCTGCAGACCTACTACGGCACCATGGCTCAGATTAAGTTGCTTACT
GCCCTGCCGGAACTAATCTGGACGCACTTGGACAACGATCGCTTCTATGC
CGCTACTGAGTTGTTCATCTTCAGTCGCCACATCAGCACGGGCTTGCAAC
TGGACGGCCAGAGTGCCCTGATGCAGAAACTACCGGTAGCGCGCAAGCAA
TGGGAAATCCTGCGTCCCTTTCACGTGACCATCAAACAAGCCATACTGAC
CGCACTGGAGAGGGAGGAACTCCTACAAGAAATGACTGTGGACTGCCTGC
AGAGCCTTCTCTTGCTAGACAAAAGCGATTTGAGTACTGTGCTGAAATCC
TTCTTGAACCTGCGCTCCTCAGCCTTTCTGAACTGCCTGCAAAGCGGTCC
ATCGGAGCCACGTCGCGTCAAGGATCGCATTTTGGCTAGCTTAAACGTGC
TCAACAGCACCGTGGAGCTTCTGGACAAGTGTCTTTTGAGTTATAGCCTT
CTTTTTAGCCGCTTGGAG
MXO04105.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:11:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4848-PA | 2661 | CG4848-RA | 1..846 | 23..868 | 4161 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4848-RC | 4785 | CG4848-RC | 83..928 | 23..868 | 4189 | 99.6 | Plus |
| CG4848-RB | 2973 | CG4848-RB | 83..928 | 23..868 | 4189 | 99.6 | Plus |
| CG4848-RA | 2919 | CG4848-RA | 83..928 | 23..868 | 4189 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12218733..12219415 | 838..156 | 3415 | 100 | Minus |
| 3R | 32079331 | 3R | 12219470..12219604 | 157..23 | 649 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:05:40 has no hits.
MXO04105.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:11:30 Download gff for
MXO04105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4848-PA | 1..846 | 23..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:18 Download gff for
MXO04105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4848-RA | 83..928 | 23..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:01 Download gff for
MXO04105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4848-RA | 83..928 | 23..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:01 Download gff for
MXO04105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12218635..12218663 | 840..868 | 100 | <- | Minus |
| 3R | 12218732..12219414 | 157..839 | 99 | <- | Minus |
| 3R | 12219471..12219604 | 23..156 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:18 Download gff for
MXO04105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8044357..8044385 | 840..868 | 100 | <- | Minus |
| arm_3R | 8044454..8045136 | 157..839 | 99 | <- | Minus |
| arm_3R | 8045193..8045326 | 23..156 | 98 | | Minus |
