MXO04106.5prime Sequence
664 bp (594 high quality bases) assembled on 2007-07-18
> MXO04106.5prime
CCTTTTTAGGGGGCCTTCTGTCGAGATGGGGAAAATGGTCAGCCCTGAAA
GGGCCACGGATCCGGTGGTCTCGGAAAAGGTGGAGCTATCGCGATTCGGA
GAGTTCTGCCAGCGGCGCGGCATCAATCCCAACTTGATAATGCTGAAGAT
AACCCTTTTCGTGATGTATGGCGCGACCTCATCCCTGCTGCCTTACCTAA
CGATTCACATGCAGTCGATTGGACTCACGGTGGAGGAGATTGCCATCATC
TACCTGGCCCTGCCCTTCACCACCTTCCTTAGCCCGCCCATAACAGGCTT
CCTCGTTGACAAATTTGGCAAATACAAACCGGTCGTTGTGATGAGTCTGC
TCCTGAATGCGATTTTCCACCACTCGCTGCTCTTTATTCCGCAGCAGGAG
ATTCCGGGCGTGGTGCCATCGGCGTTCGTATTGAGACATCCAGACAGCGG
CGACATCGAGGTCTGGTGGTCGCCGTGTCCGAGTCGTGAGTGTCCGGAGG
AGCCGGAGCTGGAACTGCCCCCCCCCTCTTTGTTTCTACTATTGTGTGAT
GCAGGAGCAAGTTAATCCCCAGCTTTACACGAATACCCCGGCGTATGATG
TGCGCCCGGCAGCCTCCACGTCCACCACGCAGAGATCCCAGCTAAAGCAA
CCACAGCAAGGACG
MXO04106.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:11:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31663-PA | 2901 | CG31663-RA | 27..489 | 52..514 | 2315 | 100 | Plus |
| CG31663-PA | 2901 | CG31663-RA | 512..619 | 538..645 | 490 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31663-RC | 3846 | CG31663-RC | 727..1365 | 26..664 | 2895 | 97 | Plus |
| CG31663-RB | 3570 | CG31663-RB | 559..1197 | 26..664 | 2895 | 97 | Plus |
| CG31663-RA | 3678 | CG31663-RA | 559..1197 | 26..664 | 2895 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1875010..1875178 | 462..294 | 845 | 100 | Minus |
| 2L | 23513712 | 2L | 1869324..1869529 | 664..459 | 740 | 92.8 | Minus |
| 2L | 23513712 | 2L | 1879967..1880114 | 173..26 | 680 | 97.3 | Minus |
| 2L | 23513712 | 2L | 1876468..1876592 | 297..173 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:28:54 has no hits.
MXO04106.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:11:35 Download gff for
MXO04106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31663-PA | 1..639 | 26..664 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:15 Download gff for
MXO04106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31663-RA | 552..1197 | 19..664 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:39 Download gff for
MXO04106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31663-RA | 552..1197 | 19..664 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:39 Download gff for
MXO04106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1869324..1869527 | 461..664 | 92 | <- | Minus |
| 2L | 1875012..1875175 | 297..460 | 100 | <- | Minus |
| 2L | 1876469..1876591 | 174..296 | 100 | <- | Minus |
| 2L | 1879967..1880121 | 19..173 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:15 Download gff for
MXO04106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1869324..1869527 | 461..664 | 92 | <- | Minus |
| arm_2L | 1875012..1875175 | 297..460 | 100 | <- | Minus |
| arm_2L | 1876469..1876591 | 174..296 | 100 | <- | Minus |
| arm_2L | 1879967..1880121 | 19..173 | 94 | | Minus |
