MXO04116.5prime Sequence
889 bp (818 high quality bases) assembled on 2007-07-18
> MXO04116.5prime
GGGGAAGCTATCAGTCGACATGGANTCCGATTNGNACCATGAGGGGGGCA
ACTATATTGGCCCCGATTTAGACAGCGACGAGGAAGATGAGCAAAGTATT
TATGGGCAACCCGATGTGCAGGATGACCCAGAGGACGCCATGGACGAGGA
CGAGGTGGAGCCACAGGAGGACGAGGACAAGGAGGTGACCGCCGTGGTTT
TGCACGAGGACAAACGCTACTATCCGTCAGCAGTTGAGGTCTACGGCCCG
GATGTGGAGACCATTGTCCAGGAGGAGGACGCCCAGCCGCTGGACAAGCC
GCTTATAGAGCCAGTGAAGAAGCTCAAGTTCCAGATCAAGGAGCAAGACA
TGCAGGAGACCACCTACGACATGGAGTTCATGGCCGATCTCATGGACACT
CCGCCGCTTATTCGCAACGTGGCTTTGGTTGGCCACCTGCACCACGGCAA
GACCACCTTTGTCGACTGCCTCATCCGGCAGACGCATCCGCAATTTGAGA
CCATGGAGGAGCGCCAGTTGCGCTACACGGACACCCTGTTCACGGAACAG
GAACGCGGCTGCAGCATCAAGGCCACGCCGGTCACACTTGTCCTGCAGGA
TGTCAAACAGAAGAGCTACTTGCTGAACATCTTCGACACCCCGGGGCATG
TCAACTTCTCGGACGAGGCCACCGCCGCCATGCGAATGAGCGATGGTGTC
GTGCTGTTCATCGATGCCGCCGAGGGCGTCATGCTCAACACGGAGCGACT
GCTCAAGCACGCGGTGCAAGAGCGCCAGGCTATCACCGTTTGCATAAACA
AGATTGATCGCCTCATCCTGGAGCTGAAATTGCCGCCCCAGGACGCCTAC
TTTAAGTTGAACACATTGTGGAGGAAGTCAATGGGCTGC
MXO04116.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:12:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4849-PA | 2928 | CG4849-RA | 28..842 | 47..861 | 4075 | 100 | Plus |
| CG31054-PA | 375 | CG31054-RA | 28..326 | 47..345 | 1495 | 100 | Plus |
| CG4849-PA | 2928 | CG4849-RA | 842..871 | 860..889 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4849-RA | 3123 | CG4849-RA | 147..1018 | 19..889 | 4242 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27963860..27964530 | 132..802 | 3355 | 100 | Plus |
| 3R | 32079331 | 3R | 27961214..27961427 | 132..345 | 1070 | 100 | Plus |
| 3R | 32079331 | 3R | 27961041..27961156 | 19..134 | 487 | 94 | Plus |
| 3R | 32079331 | 3R | 27963687..27963802 | 19..134 | 487 | 94 | Plus |
| 3R | 32079331 | 3R | 27964587..27964676 | 801..889 | 400 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:02:54 has no hits.
MXO04116.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:12:05 Download gff for
MXO04116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4849-PA | 17..871 | 36..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:30 Download gff for
MXO04116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4849-RA | 164..1018 | 36..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:51 Download gff for
MXO04116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4849-RA | 164..1018 | 36..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:51 Download gff for
MXO04116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27963704..27963801 | 36..133 | 95 | -> | Plus |
| 3R | 27963862..27964530 | 134..802 | 100 | -> | Plus |
| 3R | 27964589..27964676 | 803..889 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:30 Download gff for
MXO04116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23789426..23789523 | 36..133 | 95 | -> | Plus |
| arm_3R | 23789584..23790252 | 134..802 | 100 | -> | Plus |
| arm_3R | 23790311..23790398 | 803..889 | 98 | | Plus |
