MXO04118.5prime Sequence
912 bp (748 high quality bases) assembled on 2007-07-18
> MXO04118.5prime
CCCCTTTAGGAGGTTATCANTCNANATGGANGAANTGGNNAACCCTTCGC
CGGCACCCCCGCTGACGCAGCCGCCGCCGCCGTCGTCATCCGTGTCCATT
GAGGAGCCGCTGCCAAATGGCAAGGGAGGAGGAGCAGTAGTTGTTAACTC
GATAGCTAAGCTGCCCGAGGAGGAGCTCCTCGGCTCGGTGACCATGCACA
ATTGTCCGGGAACGCGGGCCAGTGCCCGGGTCATACAGAAGATGAAGCAG
GACCAGACGCGCCCGATGACACCGCCGCCCAGCGAACGGGAGCCGAACAA
AAAGGAGGAGAAGGCCGCCCAAAAGACGCCCAGCCAGCTGAAGACGGGCA
GCGGGAAGACCACCTGGACGAATGTGGAGCGCAACTGCTTCTTCGACGCC
CTCAACGAATTCGGCAAGGACTTCGAGGCGGTGGCCAACTGCATCAATGC
CAAGCTGAAGCGCCGCAATGCCAACAGCGACTATAGTTTCAAAACCAAGG
ACCAAGTTCGCCAGCACTATTACCAGACCCATCACAAGATTTGCAAATAT
GTGCGCTTCTCGGAGGAACTGAAAAAGCCCGCCCAGGAGTTGTACACGCT
GATCAACTACGGCGAGATGCGGCGCAAGCTGCAGTTCCTCACGGAGAAGC
ACTTCATGAAGCTGAAGCAGCTGGTCTACCAGGGCCAAATAACCGTGCGT
TGCAAGGGCAAGAACATTCGCATTAAGACGCCATCGTGCAAGGCGCTCCG
GCGGCTAAATCAATTGGATGACTCACTGGAGGATATCCGGCTGCCCAGCA
AGGTGGAGGTGCTGGTGACTCCCGCCAATATGGAGGCCTTCGGACGCGTC
CAGTCACTGGCGCAGAATCCACGCGGCAGGATCATAGTTCCGCTGCACAA
GAAACTAATCAG
MXO04118.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:12:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2714-PB | 2949 | crm-RB | 23..887 | 48..912 | 4300 | 99.8 | Plus |
| CG2714-PA | 2949 | crm-RA | 23..887 | 48..912 | 4300 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crm-RA | 3780 | CG2714-RA | 99..963 | 48..912 | 4310 | 99.9 | Plus |
| crm-RB | 3837 | CG2714-RB | 156..1020 | 48..912 | 4310 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2737922..2738440 | 566..48 | 2580 | 99.8 | Minus |
| X | 23542271 | X | 2737470..2737674 | 770..566 | 1025 | 100 | Minus |
| X | 23542271 | X | 2737272..2737414 | 912..770 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:49:50 has no hits.
MXO04118.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:12:14 Download gff for
MXO04118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2714-PA | 16..887 | 41..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:46 Download gff for
MXO04118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crm-RB | 149..1020 | 41..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:16 Download gff for
MXO04118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crm-RB | 149..1020 | 41..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:16 Download gff for
MXO04118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2737272..2737413 | 771..912 | 100 | <- | Minus |
| X | 2737470..2737673 | 567..770 | 100 | <- | Minus |
| X | 2737922..2738447 | 41..566 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:46 Download gff for
MXO04118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2631305..2631446 | 771..912 | 100 | <- | Minus |
| arm_X | 2631503..2631706 | 567..770 | 100 | <- | Minus |
| arm_X | 2631955..2632480 | 41..566 | 99 | | Minus |
