MXO04124.5prime Sequence
838 bp (720 high quality bases) assembled on 2007-07-18
> MXO04124.5prime
TACCTTTTAGGGGGNTATCAGNCGANATGGNTGNGGNGGNCCACCTTCGT
ATTCGTATAACAGGTCAGGTGGTAGAGGACGTGCCACCTCCTAAGCCCGC
TGAAGATCAAAGCACTGATCAAGCGGATGCGGCACCTATAAAATCAAGAT
CCGACCCAGCCCGAAAGCCCCGTGGCCGAATTCCCAGGAGTCGGACCGGA
AAATCACGTGAATCGGCGGCTGCTGAAGAACTTATACAAAACCAGACTCT
GGAGCCGCCACTGAAATCAGGCAAAGTCGAGTCATCGAGCTTGCCAAAGC
CTCCAACAGAAGAAAAGATAGTGGAACCTGAGACTGGTGCCAAAGAAAAT
GTTAATCAATCTGCGCCCAGCGCCCAACCTGTTCTTATTGTTGAAGTGGA
GAACGTAAAGCAACCGATCTATAAACAAACGGAAGAGGTGAAGGCATTAA
CTCAGGAGATAATCAAGACTCTTCGGGACATAATCACAATGAATCCCTTG
TATAGAGAGAGTCTACAGCAGATGCTGCACCAAAATCAACGAGTTGTCGA
CAACCCCATTTATCTGTGCGATTTAGGAGCATCCCTTTCCGCTGGAGAAC
CAGCTGAGCTGCAAAAAATTCTTGAGGAAACAGATATCCCAGAACGTCTA
CAATTGGCCTTAACTTTACTCAAAAAGGAGTTGGAACTCTCCAGGCTCCA
ACAAAAAATTGGACGCGAAGTAGAGGAAAAAGTCAAGCAGCAACATCGCA
AATATATACTCCAGGAACAGTTGAAAGTCATCAAAAAAGAACTGGGCATC
GAAAAAGACGACAAGGATGCCATTGGTGAAAAGTACCG
MXO04124.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:12:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8798-PA | 3021 | CG8798-RA | 543..1334 | 47..838 | 3960 | 100 | Plus |
| CG8798-PB | 2499 | CG8798-RB | 21..812 | 47..838 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lon-RA | 3707 | CG8798-RA | 640..1451 | 27..838 | 3986 | 99.3 | Plus |
| Lon-RC | 3761 | CG8798-RC | 766..1505 | 99..838 | 3700 | 100 | Plus |
| Lon-RC | 3761 | CG8798-RC | 640..712 | 27..99 | 291 | 91.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19610802..19611208 | 505..99 | 2035 | 100 | Minus |
| 3L | 28110227 | 3L | 19610354..19610556 | 838..636 | 1015 | 100 | Minus |
| 3L | 28110227 | 3L | 19610615..19610746 | 635..504 | 660 | 100 | Minus |
| 3L | 28110227 | 3L | 19611325..19611397 | 99..27 | 291 | 91.8 | Minus |
Blast to na_te.dros performed 2014-11-28 21:48:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 1731 | 4648 | 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). | 978..1073 | 393..487 | 143 | 64.9 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 3722..3797 | 394..469 | 128 | 63.2 | Plus |
MXO04124.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:12:39 Download gff for
MXO04124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8798-PB | 6..812 | 32..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:39 Download gff for
MXO04124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lon-RA | 645..1451 | 32..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:25 Download gff for
MXO04124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lon-RA | 645..1451 | 32..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:25 Download gff for
MXO04124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19610354..19610556 | 636..838 | 100 | <- | Minus |
| 3L | 19610615..19610744 | 506..635 | 100 | <- | Minus |
| 3L | 19610802..19611207 | 100..505 | 100 | <- | Minus |
| 3L | 19611325..19611392 | 32..99 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:39 Download gff for
MXO04124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19603454..19603656 | 636..838 | 100 | <- | Minus |
| arm_3L | 19603715..19603844 | 506..635 | 100 | <- | Minus |
| arm_3L | 19603902..19604307 | 100..505 | 100 | <- | Minus |
| arm_3L | 19604425..19604492 | 32..99 | 92 | | Minus |
