MXO04127.5prime Sequence
669 bp (597 high quality bases) assembled on 2007-07-18
> MXO04127.5prime
CANNCNNAATGNCNCGGATAAAGAACCTTGAAGATGAACATGCCTCCAGC
CGCCGCAGGACTCAGATCAATCTGATCGAGTTCAGTTTCTTGGATCACAA
GGCGGAGCTCGTGGGCCTGCTGCAGGCCAAGAGCCGCCAGGTAGGCAGGA
GTCTGGTGGAGAACGAGGCTGACTTCTGGAAGTTCGTGGGCAAGTACGAG
GCTATGATGCGCTCCACGGGCCAGCCCGTGCTGCCGCCTCGACTCGCGGA
GGCGGAGCTGAGCAGCATGCAGCCGTATCACCGCAGCAAGCACTTGGCAT
TGCGGCTGGACGCTGACGAACTGCTTCAGGAGGCGCGCGACCAAATGCAG
TCCCAGTTTCGTCATATCTTGCTGGTGTACTTAGACTTCCGCCAGACGGA
AAAGTTCCAGCGTATCCGAAAGCTGCGGCAGACACAACGCAATCTACCCA
TTGCTCGCTTCCGGAAGGACTTGCGCGAGGCACTGGACACGTCCCGCGTG
GTCATCGTGGCCGGTGACACTGGCTGCGGCAAGTCCACACAGGTGCCCCA
GTATCTCTATGACTTTGGCTACCGCAGCATTGCTTGCACCCAGCCGCGCC
GTTTGGCCTGCGTCTCCCTGTGCAAGCGCGTTGCGCACGAGCTGCTGGAC
GACTACGGCAGTCGGGTGG
MXO04127.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:12:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32533-PA | 3420 | CG32533-RA | 24..661 | 32..669 | 3190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32533-RB | 3508 | CG32533-RB | 62..723 | 8..669 | 3213 | 98.9 | Plus |
| CG32533-RA | 3600 | CG32533-RA | 154..815 | 8..669 | 3213 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19478684..19479258 | 582..8 | 2778 | 98.8 | Minus |
| X | 23542271 | X | 19478537..19478624 | 669..582 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:03:03 has no hits.
MXO04127.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:12:54 Download gff for
MXO04127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32533-PA | 24..661 | 32..669 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:34 Download gff for
MXO04127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32533-RA | 178..815 | 32..669 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:59 Download gff for
MXO04127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32533-RA | 178..815 | 32..669 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:59 Download gff for
MXO04127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19478537..19478623 | 583..669 | 100 | <- | Minus |
| X | 19478684..19479234 | 32..582 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:34 Download gff for
MXO04127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19372570..19372656 | 583..669 | 100 | <- | Minus |
| arm_X | 19372717..19373267 | 32..582 | 100 | | Minus |
