MXO04130.5prime Sequence
761 bp (730 high quality bases) assembled on 2007-07-18
> MXO04130.5prime
CCCTTTAAGGGAGCTATCAGTCGACATGGANGNNGAAATACCTCTTTTGG
GTGGATATCTTAATGTGCCGACCCAAACTGGATTTTCGCTAAATCGCATC
TCGAAAAAGAAAGCATGCAGTCGCTACTGTTTGCTATTCAAGGCCAGTCG
GCATGGGATTGCCCGCCTGGAGATGTGCGAAAGCAAGGAGGACCGGAACC
CCAAAATCTTCACCCTCGAAAACTGTGTGAAGATCACTCAGGAGCCGCNC
TCCCGAACGCCTCATTCACATTGTCAAGCGGCAGGCTACCCTAACACTGA
GCACAAGTAGCGAGGAGGAGCTCAAGGATTGGATCACCGNCCCTGCAAAC
GGTGGCCNTTCTGTGACACCTCNACCATCGGGGGGAATCGGGGCCATNCG
AGGAGGACAACGACCNTCTACTGCAGCTCCNTTTGATGGCNTTGTTCATT
ANTCACGTTGATTCCATNCCGAGGCCTNNCCATTCGTTGCTNGCATTGAA
NCCTAAGAANCATATATGCTCCAAATGACGCCCNACTGAACTCTCAGTTC
GAAATCTGGAGGAATTTGGAGCGCCACAATCCGCCATGGTGGCCATNNAT
CGTTTCATTAGGAAANNGTACGGCTANNTCGCGATAGGCAAGTTNNCACC
TTTGAAGGCGAGGCAGAAAAATGGCACCNNACCGGCGAAAGGCGTTATTC
CNACCCTGGATCACANCCANNATCCACAGGAAGGTAATTCCNNGCTGCAT
NNGTCCGCCAA
MXO04130.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:13:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2079-PA | 1869 | l(1)G0331-RA | 10..223 | 35..248 | 1020 | 99 | Plus |
| CG2079-PA | 1869 | l(1)G0331-RA | 224..313 | 250..339 | 450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dok-RA | 3487 | CG2079-RA | 385..1058 | 35..761 | 2400 | 92.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7325534..7325850 | 108..430 | 1315 | 98.1 | Plus |
| X | 23542271 | X | 7324598..7324672 | 35..109 | 345 | 97.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:42:44 has no hits.
MXO04130.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:13:06 Download gff for
MXO04130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2079-PA | 1..667 | 26..741 | 92 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:40 Download gff for
MXO04130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dok-RA | 374..1042 | 23..741 | 92 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:09 Download gff for
MXO04130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dok-RA | 374..1042 | 23..741 | 92 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:09 Download gff for
MXO04130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7324587..7324672 | 23..109 | 93 | -> | Plus |
| X | 7325536..7325853 | 110..434 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:40 Download gff for
MXO04130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7218620..7218705 | 23..109 | 93 | -> | Plus |
| arm_X | 7219569..7219886 | 110..434 | 97 | -> | Plus |
