MXO04132.5prime Sequence
756 bp (690 high quality bases) assembled on 2007-07-18
> MXO04132.5prime
CAGTCGACATGAAAACCTCTGGGGCCCGTAATACTGACGAGCTGAACAAG
TCATCGCACAGCAAAGTCAGCAAAAAGTCCACTAAGTCGCGATCTAAGTC
GGCGAAATTGGAGTTGACTGGAAAGAATTCCCTGTCGGCATCCGCATCAT
CCTCCATCGCATCCGCAGTGAGCGGGGGCGTTGCAGTGGGCAGCCTGCCG
GCCACGCCCACTCACCTAAACATGGTGACAACGCCCACCACGCCAACATC
TAGTCTGGGTAACTACAATCTGTTTGACGCCTCATTTGCGGTAGCAGGAA
GTGGTGGGCACGGACTTGCAGGCGGCATCGCGGGCGCAGAAGCCTCTGGC
AACTCCAGTCGAATGGGTCATCAGAAGAGCTATGCTGGTTTCGATCCGCG
CAGCATCAAGATCTTTTGGGAGCAGCACGACCAGACCGATGTGGAACTCT
CCCAGGATGTGTGCGCCCGTTTGGCGGAAGATGCCTCCTACAAAGTCTGG
GAGCTGATCAATAATGTCAAAATATACTCGCGCCACTCGGGCGGAGTGGT
GACATACGACCTGGTGAACGAAGTGCTAAAAGATGCCGATGTGCCGCCTA
TGCTGGGTGCGATGGACAGCGACTGGGACCGGATCGACTATGACGGCAGT
TTTTACTTTCACTCGGATAAGATCTTCGAGCTGAGCGCGGAGTTTCAGAA
GGAAGTCAATCTGTGCACACCTGATGATGCAGACTTTCAGAGCATCTGCC
CAGTGG
MXO04132.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:13:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3883-PA | 2154 | CG3883-RA | 1..748 | 9..756 | 3665 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Saf6-RA | 2416 | CG3883-RA | 120..867 | 9..756 | 3695 | 99.6 | Plus |
| Saf6-RB | 2407 | CG3883-RB | 120..858 | 9..756 | 3550 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 815474..815831 | 366..9 | 1745 | 99.2 | Minus |
| 2L | 23513712 | 2L | 814978..815221 | 756..513 | 1220 | 100 | Minus |
| 2L | 23513712 | 2L | 815275..815422 | 512..365 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:42:53 has no hits.
MXO04132.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:13:15 Download gff for
MXO04132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3883-PA | 1..748 | 9..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:48 Download gff for
MXO04132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Saf6-RA | 115..867 | 2..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:15 Download gff for
MXO04132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Saf6-RA | 115..867 | 2..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:15 Download gff for
MXO04132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 814978..815221 | 513..756 | 100 | <- | Minus |
| 2L | 815275..815421 | 366..512 | 100 | <- | Minus |
| 2L | 815475..815836 | 2..365 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:48 Download gff for
MXO04132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 814978..815221 | 513..756 | 100 | <- | Minus |
| arm_2L | 815275..815421 | 366..512 | 100 | <- | Minus |
| arm_2L | 815475..815836 | 2..365 | 98 | | Minus |
