MXO04133.5prime Sequence
756 bp (689 high quality bases) assembled on 2007-07-18
> MXO04133.5prime
CAGNCGANATGGNNGNGANTGGNATCCTTTTTGGGAANGAGAGNTGNTAT
GTTGNGGNAGNCCGATCCGGAGGAATTGAGACGCTGGCCAATGACTACAG
TCTCCGGGCCACGCCCTCCTTTGTGGCCTTCGATGGCAAGAAGCGTATCA
TCGGCGTGGCCGCTAAGAACCAGCAGGTGACAAACATGAAAAACACAGTT
GGCGGATTCAAGCGCCTGCTTGGCCGCAAATTCAACGATCCCCATGTACA
ACACGAACTCACGAGCATTCCAGCGCGCGTGGAGGCGCGCGGTGATGGCA
GCATTGGCATCAAGGTGAACTACCTCGGGGAGGATCAGCATTTCGGACCT
GAGCAGCTGACGGCGATGCTCTTCACCAAGCTGAAGGAGACATCGGCGGC
TGCCATGCAGACGCAGGTTAACGACTGCGTCATCGCCTGTCCCGTGTTCT
TTACCAATGCAGAGCGTAAGGCTCTCCTGGATGCCGCCCAGATCGCCGGA
CTGAACGTCCTGCGATTGATGAACGAAACGACGGCCACCNGCGCTGGCCT
ACGGCTTCTACAAGAACGATCTGTTCGAGGACAAGCCACGTAACGTGATC
TTTGTTGACTTTGGGCACTCGTCACTGCAGGCCAGTGCCTGTGCCTTCAC
CAAGGGCAAACTGAAGATGCTGGCCAGCACCTGGGACCAGATCGGTGGAC
GCGACATTGACTTGGCTCTGGGCGATTACTTCGCCAAGGAGTTCCAGGAG
CGTTAC
MXO04133.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:13:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6603-PA | 2415 | Hsc70Cb-RA | 21..531 | 29..539 | 2416 | 98.6 | Plus |
| CG6603-PB | 2415 | Hsc70Cb-RB | 21..531 | 29..539 | 2416 | 98.6 | Plus |
| CG6603-PC | 2415 | Hsc70Cb-RC | 21..531 | 29..539 | 2416 | 98.6 | Plus |
| CG6603-PA | 2415 | Hsc70Cb-RA | 532..747 | 541..756 | 1080 | 100 | Plus |
| CG6603-PB | 2415 | Hsc70Cb-RB | 532..747 | 541..756 | 1080 | 100 | Plus |
| CG6603-PC | 2415 | Hsc70Cb-RC | 532..747 | 541..756 | 1080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsc70Cb-RI | 3590 | CG6603-RI | 581..1307 | 29..756 | 3534 | 98.9 | Plus |
| Hsc70Cb-RH | 3258 | CG6603-RH | 280..1006 | 29..756 | 3534 | 98.9 | Plus |
| Hsc70Cb-RG | 3283 | CG6603-RG | 305..1031 | 29..756 | 3534 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14039048..14039687 | 116..756 | 3155 | 99.8 | Plus |
| 3L | 28110227 | 3L | 14037664..14037750 | 29..115 | 354 | 92 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:05:55 has no hits.
MXO04133.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:13:20 Download gff for
MXO04133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6603-PC | 31..747 | 39..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:23 Download gff for
MXO04133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc70Cb-RG | 315..1031 | 39..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:10 Download gff for
MXO04133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc70Cb-RG | 315..1031 | 39..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:10 Download gff for
MXO04133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14037677..14037750 | 42..115 | 93 | -> | Plus |
| 3L | 14039048..14039687 | 116..756 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:23 Download gff for
MXO04133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14030777..14030850 | 42..115 | 93 | -> | Plus |
| arm_3L | 14032148..14032787 | 116..756 | 99 | | Plus |
