MXO04134.5prime Sequence
779 bp (752 high quality bases) assembled on 2007-07-18
> MXO04134.5prime
CANGTCGAATGGGGAANATGATGTGCCCTTTAATGCCCACGATATCCGAG
GATAGCATCTCGCAGCGCTCCTCGCAGTTTAGCGGGGAGGATGCCAACTT
TGAGCAGCTGATGGTCTCCATGCTGGACGAGCGGGACAAGCTGATGGACA
GCCTGAGGGAGGCGCAGGAGCGGCTTAACGAGACGGAGAACAAGCTGCGT
GACGTCGAGAAGGAGCGGGACAGCCTGCAGCGACAGATTAACGCTAATCT
GCCGCAAGAGTTTGCCACCCTGACCAAGGAGCTGACGCAAGCGCGGGAGA
CCCTTTTGGAACGTGACGAGGAGATTGGGGAGCTCAAGGCGGAGAGGAAT
AATACCAGGCTTCTCCTCGAACATCTGGAGTGCTTGGTGTCCCGCCACGA
GCGTTCCCTGCGTATGACCGTTGTGAAGCGACAGGCTGCCGCCCAGAGCG
GCGTCTCCAGCGAGGTGGAAGTGCTCAAGGCGCTAAAGTCGCTGTTCGAG
CACCACAAGGCGCTGGACGAGAAGGTGCGCGAGCGGTTGCGGCTTTCCAT
CGAGAAGAACAACATGATGGAAGAGGAACTCAGCTCTGCCAAGGAGGAAC
TGGCCCAGTACAAGGCGGGCGTGGTGCCAGCTGGCGTGGGCAGTGGCAGC
GGAGCAGGGAGTGCCGCAACCACCGCCGGTGGTGGGGGCGCCGAGAACGG
GTCAAAGAGAAGATGGCGGGCGTGGGCGGATCTGGTGGCGTTAATGGCGA
GGCAAATGAGCTGAACGACTACGCAGCCA
MXO04134.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:13:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11199-PB | 3606 | Liprin-alpha-RB | 23..693 | 31..701 | 3355 | 100 | Plus |
| CG11199-PA | 3606 | Liprin-alpha-RA | 23..693 | 31..701 | 3355 | 100 | Plus |
| CG11199-PB | 3606 | Liprin-alpha-RB | 695..772 | 702..779 | 390 | 100 | Plus |
| CG11199-PA | 3606 | Liprin-alpha-RA | 695..772 | 702..779 | 390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Liprin-alpha-RE | 4466 | CG11199-RE | 203..975 | 8..779 | 3754 | 99.1 | Plus |
| Liprin-alpha-RD | 4949 | CG11199-RD | 419..1191 | 8..779 | 3754 | 99.1 | Plus |
| Liprin-alpha-RC | 5970 | CG11199-RC | 415..1187 | 8..779 | 3754 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6725775..6726129 | 359..712 | 1725 | 99.7 | Plus |
| 2L | 23513712 | 2L | 6724847..6725097 | 8..258 | 1169 | 97.6 | Plus |
| 2L | 23513712 | 2L | 6725158..6725259 | 258..359 | 510 | 100 | Plus |
| 2L | 23513712 | 2L | 6726200..6726268 | 711..779 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:43:02 has no hits.
MXO04134.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:13:25 Download gff for
MXO04134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11199-PA | 10..771 | 18..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:54 Download gff for
MXO04134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Liprin-alpha-RC | 425..1186 | 18..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:20 Download gff for
MXO04134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Liprin-alpha-RC | 425..1186 | 18..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:20 Download gff for
MXO04134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6724857..6725096 | 18..257 | 98 | -> | Plus |
| 2L | 6725158..6725259 | 258..359 | 100 | -> | Plus |
| 2L | 6725776..6726129 | 360..712 | 99 | -> | Plus |
| 2L | 6726202..6726267 | 713..778 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:54 Download gff for
MXO04134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6725776..6726129 | 360..712 | 99 | -> | Plus |
| arm_2L | 6724857..6725096 | 18..257 | 98 | -> | Plus |
| arm_2L | 6725158..6725259 | 258..359 | 100 | -> | Plus |
| arm_2L | 6726202..6726267 | 713..778 | 100 | | Plus |
