MXO04135.5prime Sequence
705 bp (670 high quality bases) assembled on 2007-07-18
> MXO04135.5prime
CTCTTTAGGAGGCTATCANNNCGAATGNGCGAGCCCAACCTGCATGTGAT
CCTGTCGCACGCGCTGATCGGCTGCGGCTTCTTCTTCCTATACGTGCAGC
ATGTGCGCGTGATCTTCGAGACGCGCACCAACATCCAGCAGCTCAATCAG
CTGGAGCGGGAGGCGCTTCTGCGGCGCGAGGATGCCCTGTACTATGCCTT
CTACAAGCAGCTGGCCGAAGGGCCGGACTTTTGGCACGGCTACGAGCAGC
TGAAGAACGTCACGGACATCGAGTATCCGCACAGTGTCAATGTGCTGCAG
CGATTCTACGTGCTGCCGGAGCTGGTCACGGCGTACTTCTTTCACGTAGT
GCGCTCCGGCTTCAATCCAATGGTGCAACCGATGCAGTTCTATCTGGAGT
TCGTGTGGCTGATGGGCGGGGTAACCCTGCTGGTACTCTACCTGTACGGA
ACGCTGCTCAGCGAGAACATTTTCGGTGGCATATACGGCGTAATCTCGTA
CCTGATGTTCCACAGCTTCGTGGCCAAGATCTATGAGCGGCCGCTGGCGC
GGGAGAACTTCGCCTTTCCTTCATTTTCCTGCAGATGTTTTATCTGTGTA
TCTGCATCGGAAGGATCATACACCGACAGCGGCACACATCTCGCATGTTC
ATGATCTTCGCCATGTCGCTTTTCACGCCTGCGCCCTATCTCCTGGCAGT
TCTCC
MXO04135.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:13:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6659-PA | 2619 | CG6659-RA | 1..545 | 25..569 | 2656 | 99.4 | Plus |
| CG6659-PB | 2274 | CG6659-RB | 1..200 | 370..569 | 1000 | 100 | Plus |
| CG6659-PA | 2619 | CG6659-RA | 547..653 | 570..676 | 535 | 100 | Plus |
| CG6659-PB | 2274 | CG6659-RB | 202..308 | 570..676 | 535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6659-RA | 3356 | CG6659-RA | 144..827 | 25..705 | 3304 | 99.1 | Plus |
| CG6659-RB | 3426 | CG6659-RB | 259..897 | 70..705 | 3120 | 99.5 | Plus |
| CG6659-RB | 3426 | CG6659-RB | 92..138 | 25..71 | 194 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18656324..18656645 | 653..333 | 1560 | 99.7 | Minus |
| X | 23542271 | X | 18656711..18656976 | 335..70 | 1330 | 100 | Minus |
| X | 23542271 | X | 18657097..18657143 | 71..25 | 194 | 93.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:29:17 has no hits.
MXO04135.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:13:29 Download gff for
MXO04135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6659-PA | 1..684 | 25..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:21 Download gff for
MXO04135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6659-RA | 137..827 | 17..705 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:48 Download gff for
MXO04135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6659-RA | 137..827 | 17..705 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:48 Download gff for
MXO04135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18656217..18656270 | 654..705 | 96 | <- | Minus |
| X | 18656324..18656645 | 333..653 | 99 | <- | Minus |
| X | 18656714..18656975 | 71..332 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:21 Download gff for
MXO04135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18550250..18550303 | 654..705 | 96 | <- | Minus |
| arm_X | 18550357..18550678 | 333..653 | 99 | <- | Minus |
| arm_X | 18550747..18551008 | 71..332 | 100 | <- | Minus |
