MXO04142.5prime Sequence
803 bp (780 high quality bases) assembled on 2007-07-18
> MXO04142.5prime
CANNCNANATGANGATGGAGAACGGCCTCTCCAGGGAGTACGGAGATGGC
TACATGGAGCAGGAGGAGGAGTGGGAGCGCGAGGGCCTGCTCGATCCTGC
GTGGGAGAAGCAACAGAAGAAGACATTTACCGCCTGGTGTAACAGCCATT
TGCGCAAGGCCGGTACAGCCATCGACAACATCGAGGAGGACTTCCGCAAC
GGCCTCAAGCTGATGCTGCTGCTGGAGGTGATCTCCGGCGAGACGCTCCC
CAAGCCCGATCGCGGCAAGATGCGCTTCCACAAGATCGCCAACGTGAACA
AGGCTCTCGACTTCATCGCCTCCAAGGGCGTCCACCTGGTCTCTATCGGC
GCCGAGGAGATCGTCGATGGAAACTTGAAGATGACTCTGGGTATGATCTG
GACGATTATCCTGCGCTTCGCCATTCAGGACATCTCCGTGGAGGAGATGA
CCGCCAAGGAGGGTCTGCTGCTGTGGTGCCAGCGCAAGACGGCTCCCTAC
AAGAACGTCAACGTACAGAACTTCCATCTGTCGTTCAAGGATGGTCTGGC
CTTCTGCGCCCTTATCCATCGCCATCGTCCAGATCTAATCGACTACGCCA
AGCTGTCCAAAGACAATCCTCTGGAGAATCTTAATACTGCCTTCGATGTG
GCCGAGAAGTACCTGGATATTCCGCGCATGTTGGATCCAGATGATCTCCA
GAATACAGCTTTGCCCGATGAGCGGGCGGTGATGACGTATGTGTCCTCGT
ACTATCACTGCTTCAGTGGCGCCCAAAAGGCGGAAACGCTGCCAACCGGA
TCT
MXO04142.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:13:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4376-PA | 2688 | Actn-RA | 1..779 | 9..787 | 3826 | 99.6 | Plus |
| CG4376-PC | 2754 | Actn-RC | 1..687 | 9..695 | 3366 | 99.5 | Plus |
| CG4376-PB | 2688 | Actn-RB | 1..687 | 9..695 | 3366 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Actn-RF | 3877 | CG4376-RF | 399..1194 | 9..803 | 3914 | 99.5 | Plus |
| Actn-RA | 3511 | CG4376-RA | 399..1194 | 9..803 | 3914 | 99.5 | Plus |
| Actn-RI | 3516 | CG4376-RI | 404..1199 | 9..803 | 3449 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2030442..2030861 | 540..121 | 2100 | 100 | Minus |
| X | 23542271 | X | 2030215..2030370 | 693..538 | 780 | 100 | Minus |
| X | 23542271 | X | 2034955..2035068 | 122..9 | 529 | 97.4 | Minus |
| X | 23542271 | X | 2028664..2028751 | 780..693 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:43:17 has no hits.
MXO04142.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:13:45 Download gff for
MXO04142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4376-PA | 1..796 | 9..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:02 Download gff for
MXO04142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actn-RA | 393..1194 | 1..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:28 Download gff for
MXO04142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actn-RA | 393..1194 | 1..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:28 Download gff for
MXO04142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2028003..2028027 | 780..803 | 96 | <- | Minus |
| X | 2028665..2028750 | 694..779 | 100 | <- | Minus |
| X | 2030215..2030368 | 540..693 | 100 | <- | Minus |
| X | 2030443..2030859 | 123..539 | 100 | <- | Minus |
| X | 2034955..2035074 | 1..122 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:02 Download gff for
MXO04142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1922036..1922060 | 780..803 | 96 | <- | Minus |
| arm_X | 1922698..1922783 | 694..779 | 100 | <- | Minus |
| arm_X | 1924248..1924401 | 540..693 | 100 | <- | Minus |
| arm_X | 1924476..1924892 | 123..539 | 100 | <- | Minus |
| arm_X | 1928988..1929107 | 1..122 | 94 | | Minus |
