MXO04143.5prime Sequence
879 bp (757 high quality bases) assembled on 2007-07-18
> MXO04143.5prime
CCCTTTTGAGGGGCTTATCAGTCGACATGTCNGAAACGTCAAGCCTCTAC
GGGGATGCGGACCGAGATTGCAGAAGGATTGAGGGCCTCCGACAGCGCTC
ACAACGCCTTGCTGCCCGCCTCCAGCAGATGCAGAGGGAAATGGAGTCTA
ATGCATCCAGCAAAGACCTATCGGCCAACAATGCCGTTATTCCGCTGCAG
CCACTAATGCGCTGGGCGGAACCACGGCCACATCCCAACCAATCCCAACC
ATCTGCTCGGAGCAACAGCAGGCAGGCCATTCCTTACGGTGTGCCAGTAT
CCACGCCAGCGCCGGTAGCTATGCAATTGCCCTACCACGTAGCATTCGCC
TCCTACCAGGCGACCATGCAGATTCCCTGCCTTCAGCCACTTTCGCATTT
GCACGTCGTGTCTAGTCCCAGCCATCGGTTAATAGCGAAAAAGAAGTCGA
AGCGGGCTCTTCGAAATGAGGTGGAAGCTCTTCAGGATATGGTCAAACAT
CTTTCACACCTCTCCCCAGATGTTAACGCGTATGCCTGCCAGCTGATACG
TAAAAACGAGATCCTTTCTCAGCTCGAGTGGAGTCAGACCAGGTCAGAAG
CACATCCGCAACAGGTTGGTTACCAGGGGCGGCATCGCCACGATTCTGAG
GTCTCTGCTACAAACAATGGAAGTCATGTACAGCAGCAACCGAAACTAGG
ACGAAGGCAACGCAATAGCAAGAAAAACGATGGATCCGGTAGCAATGGGA
CCCAATCGCAAAAAACCGAACTAGAGGCCATGCGGTCGTACATAAACAAG
ATTGTCCAACGTCACGTGGGTATGGATCACCAGTTGTCGGAAGACTTTGA
TTTCAAAGGTAACTTCTCCGACCTGGAAG
MXO04143.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:13:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16940-PB | 3099 | CG16940-RB | 1..821 | 27..847 | 4011 | 99.5 | Plus |
| CG16940-PC | 3135 | CG16940-RC | 37..857 | 27..847 | 4011 | 99.5 | Plus |
| CG16940-PA | 3099 | CG16940-RA | 1..821 | 27..847 | 4011 | 99.5 | Plus |
| CG16940-PB | 3099 | CG16940-RB | 825..853 | 851..879 | 145 | 100 | Plus |
| CG16940-PC | 3135 | CG16940-RC | 861..889 | 851..879 | 145 | 100 | Plus |
| CG16940-PA | 3099 | CG16940-RA | 825..853 | 851..879 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16940-RA | 3605 | CG16940-RA | 137..989 | 27..879 | 4164 | 99.3 | Plus |
| CG16940-RC | 3546 | CG16940-RC | 78..930 | 27..879 | 4164 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 212845..213697 | 27..879 | 4164 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:43:35 has no hits.
MXO04143.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:13:50 Download gff for
MXO04143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16940-PA | 1..853 | 27..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:10 Download gff for
MXO04143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16940-RC | 74..930 | 20..879 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:05 Download gff for
MXO04143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16940-RC | 74..930 | 20..879 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:05 Download gff for
MXO04143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 212843..213697 | 24..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:10 Download gff for
MXO04143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 212843..213697 | 24..879 | 99 | | Plus |
