MXO04150.5prime Sequence
673 bp (600 high quality bases) assembled on 2007-07-18
> MXO04150.5prime
NAGNNNGAATGNNAATCGCGCTCTTCCCTCTTGGACACTTGCCAATCTTT
CGTAAGACGCCTTTGTCAGCCTCCTCCTCCCCGCCGCCGTCTGTCCACCG
GTCGCCAAGGTGTGGCAAAGCAAGTACCGCGTACCATCCACCGCCAGCAG
ACGCCTGCATCAGCATTACTGCTTCAGCCATTGACGCAGCATCCGGGATG
AGCAACAGCGCCGAACAGGACAAGCCGATTGCCGCCAACGGCAATGCGGC
AGAGCCCCAGGAAATAGAAGTCATCCATTTCCAAGCGCAAGAGAAGCAGT
GTTGCCGCGTTATTAGATCCAATAAGACCAAGGTCCTCACATCCGGCGGC
GTTCACACACGCGGTTCCTCCAAGGTCAAGCTAAAGAACATCGTCGACTA
CAAGTGGGAGCGCAAGTACTACTATCCGGGTCACCTGGTCGCTGTCCACC
GCGATGGCAAGCACCTGGCGTACGCCATTAATGTCAACAACAAAGCCACC
GGAATGGAGGGCATGGTGCGCGTATGCAACATAGCCACCAGTATGCGAGC
CTTGATCAAGGGAATGAGCGGCGAGGTCTTAGATCTGCAGTTTGCCCATA
CGGATTGTGAGCGTATATTAGCTGTGATCGATGTCAGTTCGCTGTTTGTC
TACAAAGTCGATCAAATCGAAAG
MXO04150.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:14:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6181-PA | 4065 | CG6181-RA | 6..663 | 14..671 | 3215 | 99.5 | Plus |
| CG6181-PB | 4065 | CG6181-RB | 6..663 | 14..671 | 3215 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ge-1-RB | 4932 | CG6181-RB | 335..992 | 14..671 | 3245 | 99.5 | Plus |
| Ge-1-RA | 4646 | CG6181-RA | 252..909 | 14..671 | 3245 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11100294..11100554 | 274..14 | 1260 | 98.9 | Minus |
| 2L | 23513712 | 2L | 11100017..11100225 | 483..275 | 1045 | 100 | Minus |
| 2L | 23513712 | 2L | 11099567..11099755 | 671..483 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:43:27 has no hits.
MXO04150.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:14:03 Download gff for
MXO04150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6181-PB | 1..664 | 9..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:06 Download gff for
MXO04150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ge-1-RA | 246..910 | 8..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:34 Download gff for
MXO04150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ge-1-RA | 246..910 | 8..673 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:34 Download gff for
MXO04150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11099565..11099754 | 484..673 | 99 | <- | Minus |
| 2L | 11100017..11100225 | 275..483 | 100 | <- | Minus |
| 2L | 11100294..11100560 | 8..274 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:06 Download gff for
MXO04150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11099565..11099754 | 484..673 | 99 | <- | Minus |
| arm_2L | 11100017..11100225 | 275..483 | 100 | <- | Minus |
| arm_2L | 11100294..11100560 | 8..274 | 98 | | Minus |
