MXO04151.5prime Sequence
796 bp (687 high quality bases) assembled on 2007-07-18
> MXO04151.5prime
TCAGNCGAATGGGCACCAATTCGGGACTTCCGCTGGATAAACAACAAGCC
GGTTGGCGGTGCAACAGGAGCCGGCGTCCTTGTAGGCGGCGGTGTGGGCG
GTGCCAATTCCTCGATCGGCGGTGTCCTGTCGAACAGCCTGGGCGGTGGC
GGCAGCGGCGGTCTGAGCATCAGCGGCCTCAACGCTGGTGGACAGAACGC
CAATGTGGGCGGAATGGGCAACGTTGGCGGCGACGACGGCGGAAACGGGA
TGGTGGGCGGCGGTGTAAATAACCAGCAGGCCACAACGCCCCAATACACA
ATACCGGGCATCTTGCACTTCATCCAGCACGAGTGGTCGCGCTTCGAGCT
GGAGCGATCACAGTGGGACGTGGACAGGGCCGAATTGCAGGCTCGCATTG
CTATGCTGCTTGGAGAGCGCAAGTGCTTGGAAAGCCTCAAATCGGATTTG
ACGCGCCGCATCAAGATGCTGGAGTACGCACTGCGCCAGGAGCGTGCGAA
ATTCTATCGTTTAAAATACGGCACCGATCCGCNCGCAGCTCAATGAGTTC
AAGCCATCGAACGAGGATGCCGGACTGGCCGGTGAGGTGGCCACTGACTC
GGAGGTGCCCTACAGCAGTGTCTCGAACACTACGTGGCGGCAGGGGCGTC
AGATGCTGCGACAGTATCTGGCCGAGATTGGCTACACAGACAACATCATC
GATGTGCGTTCAAATCGGGTGCGTTCGATCCTTGGCCTAAAAATAATGCC
GAGCACGACGGCAGCGGCGGAAGACTGGGTGGTGGACTTGGCGGCG
MXO04151.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:14:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7392-PA | 2193 | Cka-RA | 31..526 | 37..532 | 2480 | 100 | Plus |
| CG7392-PB | 2193 | Cka-RB | 31..526 | 37..532 | 2480 | 100 | Plus |
| CG7392-PD | 2193 | Cka-RD | 31..526 | 37..532 | 2480 | 100 | Plus |
| CG7392-PC | 2193 | Cka-RC | 31..526 | 37..532 | 2480 | 100 | Plus |
| CG7392-PA | 2193 | Cka-RA | 527..734 | 534..741 | 1040 | 100 | Plus |
| CG7392-PB | 2193 | Cka-RB | 527..734 | 534..741 | 1040 | 100 | Plus |
| CG7392-PD | 2193 | Cka-RD | 527..734 | 534..741 | 1040 | 100 | Plus |
| CG7392-PC | 2193 | Cka-RC | 527..734 | 534..741 | 1040 | 100 | Plus |
| CG7392-PA | 2193 | Cka-RA | 736..790 | 742..796 | 250 | 98.1 | Plus |
| CG7392-PB | 2193 | Cka-RB | 736..790 | 742..796 | 250 | 98.1 | Plus |
| CG7392-PD | 2193 | Cka-RD | 736..790 | 742..796 | 250 | 98.1 | Plus |
| CG7392-PC | 2193 | Cka-RC | 736..790 | 742..796 | 250 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cka-RG | 2738 | CG7392-RG | 317..1107 | 8..796 | 3815 | 99.1 | Plus |
| Cka-RF | 5366 | CG7392-RF | 497..1287 | 8..796 | 3815 | 99.1 | Plus |
| Cka-RE | 2819 | CG7392-RE | 317..1107 | 8..796 | 3815 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8035817..8036226 | 387..796 | 1940 | 99.3 | Plus |
| 2L | 23513712 | 2L | 8032257..8032642 | 8..391 | 1800 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:06:08 has no hits.
MXO04151.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:14:08 Download gff for
MXO04151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7392-PA | 1..790 | 9..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:27 Download gff for
MXO04151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cka-RE | 311..1107 | 1..796 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:18 Download gff for
MXO04151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cka-RE | 311..1107 | 1..796 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:18 Download gff for
MXO04151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8032251..8032641 | 1..390 | 97 | -> | Plus |
| 2L | 8035821..8036226 | 391..796 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:27 Download gff for
MXO04151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8032251..8032641 | 1..390 | 97 | -> | Plus |
| arm_2L | 8035821..8036226 | 391..796 | 99 | | Plus |
