MXO04153.5prime Sequence
836 bp (744 high quality bases) assembled on 2007-07-18
> MXO04153.5prime
CAGNCGACATGGTCAAACGCACTTTTCAGGTGGTCTATCGGCCCATCAGG
AGCAACTTTGTTCTGCTGCCGGATCAGTACTACGGCGTCGTTTCGACCTA
TGACACGGGCTGCCTGAGCTTGCAGTACAATGGTCGGACGCATTACGCCT
CCTGGGCGCCACAAAAGGGCGGCGGCGGCATTAAAGACACCGAGATTGGG
ATCAATGCCAGAGCGGCCAAGGAGATCGGTCTGCACGAGAATGATCTGGT
CAAGTGTGCGCTCATCGCTGACGTTCTCAACCTGCGCAGCGTCCACGTTA
CCCCCGTCTCGTCCAAGGACTGGGAGATCATAGAACTTAGCACTGAAAAG
ATATCGGGCAGTGTGCTGGAACAAACTCGCATAGTGAATTCAACGCAGAT
CCTTATTGTTTGGATTAATAAGTCGATGCAAGTTGCGCTGACAGTGGATC
GTCTGAAGCCGCACATGAACTACGGGAGAATAGATCACAATACGGAACTC
GTGGTGGCGCCCAATCTGTACAAGGGTCTGACCAATGGAACTTCAAATGG
TGTTATAGAGGAAAACACAAAACTCTCCAGAAGTAAAACCACTGCCCAGG
TCAAGGATGAGCTGACTGAAAAGTTAACACCGTTGACCCATTCCTCCACG
GTGTCCAATGTGAAAAATACTATTCAGCGTAACAAGCGTCAGGATCACAT
GGAGCGTCTTAAAAAGGACTTGCCGCCGCGAAAGCTCGCGTAGCTTCGAA
TTTCGTGTCATTCGAGGTCTATGGCGGGAGCAGGCCCAGGAGTCGGATGT
GTTTGTGAACGGAAAGCATCTGCCTGAGTTCTTTGA
MXO04153.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:14:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6760-PA | 3021 | l(3)70Da-RA | 5..715 | 13..723 | 3530 | 99.8 | Plus |
| CG6760-PA | 3021 | l(3)70Da-RA | 715..827 | 724..836 | 565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex1-RA | 3275 | CG6760-RA | 77..903 | 9..836 | 4085 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14072931..14073319 | 447..836 | 1900 | 99.7 | Plus |
| 3L | 28110227 | 3L | 14072135..14072263 | 102..230 | 645 | 100 | Plus |
| 3L | 28110227 | 3L | 14072759..14072873 | 333..447 | 575 | 100 | Plus |
| 3L | 28110227 | 3L | 14072381..14072486 | 228..333 | 530 | 100 | Plus |
| 3L | 28110227 | 3L | 14071968..14072061 | 9..102 | 440 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:29:25 has no hits.
MXO04153.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:14:18 Download gff for
MXO04153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6760-PA | 1..826 | 9..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:22 Download gff for
MXO04153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex1-RA | 69..902 | 1..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:53 Download gff for
MXO04153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex1-RA | 69..902 | 1..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:53 Download gff for
MXO04153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14071960..14072060 | 1..101 | 94 | -> | Plus |
| 3L | 14072135..14072261 | 102..228 | 100 | -> | Plus |
| 3L | 14072382..14072485 | 229..332 | 100 | -> | Plus |
| 3L | 14072759..14072873 | 333..447 | 100 | -> | Plus |
| 3L | 14072932..14073318 | 448..835 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:22 Download gff for
MXO04153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14065235..14065361 | 102..228 | 100 | -> | Plus |
| arm_3L | 14065482..14065585 | 229..332 | 100 | -> | Plus |
| arm_3L | 14065859..14065973 | 333..447 | 100 | -> | Plus |
| arm_3L | 14066032..14066418 | 448..835 | 99 | | Plus |
| arm_3L | 14065060..14065160 | 1..101 | 94 | -> | Plus |
