MXO04154.5prime Sequence
880 bp (714 high quality bases) assembled on 2007-07-18
> MXO04154.5prime
CCCCTTTAGGGAGTTATCANNCNANATGGANNANNCTGNGNCCCCCCGCT
GGCTGAAGCGCTATCGCGCATTCTTCCTCATCCTGCTGCTTATCGTGGCC
ATCCAGTTGTTCCTGGCCTACAAGTCCCTGGACATCGTAGGCGGCGGTTC
CGGTTCCGGATTTGATGCGGCTGAAGCGCCTGCCAGTCCTCCGCCTCCGC
ATGCTCAGGCACGGGTCCAACCGCCCGCCAGGACCAAGCTTACTGCCCAG
CAACTGGGCTTCCAGCCAGAGTGCGACATTCTCGCCAGAGAGGCCATCTC
CGCCCTGCAGCGCGCCAAAACGAAAGACTGTCGAGAACATATCGCGCAGA
TCGCCTGCGCAATCCAAGCCGGACGCTTCTATGCGCCGCAGCTCCGGAGC
AGCTGTCCAGCTGGTAATCACACGGCGAACGTTTCTTTGGGATGCTTCAA
GGATGAGAAAGATCGCCGCCTTCTGGCCGGCTACTACAGCAGCTCCAAGA
CCTCCAATTCTCCGGCCAAATGCGTGGAGCTATGTCTGCAAAGCGGTTAC
CCGTACGCAGGGGTGCAGTACGGTCGCGAGTGCTTCTGCGGTTACGACCC
GCCTCCTAAAGCGTCGAAGCTGCCGGACTCCAGTTGCAACACCAAGTGCC
TGGGCAACGCCAAGGAAATCTGCGGCGGATTCTATGCCATGAACATATAC
GAGACCGGAATAGCCAAGTTCACCGCTCAACTGGCGGCCACCACTCCTTC
GGAGGAAACGAAGCGCGTGCGGATCGCATTTCTGCTGACGCTCAACGGAA
GAGCGCTGCGTCAGGTGCACCGACTTCTGAAGGCGCTCTATGCACCGGAG
CACGTTTACTACATCCATGTGGACGAGCGC
MXO04154.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:14:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32300-PB | 2631 | oxt-RB | 20..855 | 45..880 | 4180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oxt-RB | 3380 | CG32300-RB | 279..1114 | 45..880 | 4180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2261715..2262386 | 716..45 | 3360 | 100 | Minus |
| 3L | 28110227 | 3L | 2261453..2261613 | 877..717 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:37:28 has no hits.
MXO04154.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:14:23 Download gff for
MXO04154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32300-PB | 11..855 | 36..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:05 Download gff for
MXO04154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 270..1114 | 36..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:45 Download gff for
MXO04154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 270..1114 | 36..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:45 Download gff for
MXO04154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2261451..2261613 | 717..880 | 98 | <- | Minus |
| 3L | 2261715..2262395 | 36..716 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:05 Download gff for
MXO04154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2261451..2261613 | 717..880 | 98 | <- | Minus |
| arm_3L | 2261715..2262395 | 36..716 | 99 | | Minus |
