MXO04158.5prime Sequence
690 bp (689 high quality bases) assembled on 2007-07-18
> MXO04158.5prime
CAGNCGANATGANTCNGGAGAANTCCCATAAGCTCAAGGATTGGCTGAGC
GTGGTCCTGGAGCCACTCTGCGATGCGGACTCCTCGGCCTTGGCGCGATA
TGTCATCGCGCTGCTCAAGAAGGACAAATCGGATAAAGACCTTAAGCGGA
TCATGATCGAACAGCTCGATGTTTTCCTGTCCGAGGAGACGACACGTTTC
GTTGAACGCCTCTTCGATGCCATTGCCAGCGAGGAATACCTGACGGTCCC
TGCTGCCCCTCTAATAACAGCCTCTAGTGCATCCACCGCTGAGCTAACAG
TCGACCAGGAACTGGCCCTGGTCATTGATGGGCCCCAGGACGACATCGAA
GCGGTTTTGGTTGCCGATTCCCCTCCACCGNCCTCCTAAAGATAATGTGA
TAAAACCCGATAGCAATCAGGTCAAGTTAGAGCAGGCCAGTCAAGATGCC
AGGGAAGCTGAGGCCCTAGCTTTTATCAGCCAGGAAGCCGGCATTGCCAT
GCACGTCCCTACAGATGCCAAGCCAGCCTTTGATCATAAAACCAAAGACT
CCCACAATCAACAGTCAGCCTCCAACTACCAACACCATCATGTGCGCAGT
GCCAGCCCACCGGGCAGAAGCAGCGGCGTCAGCGGAAGTGGAGGAGGTGG
TCCCGGCGGAGCAGGTCTTGCGGCGGGTTATGCTGACAAG
MXO04158.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:14:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10084-PA | 3189 | swm-RA | 22..372 | 30..380 | 1755 | 100 | Plus |
| CG10084-PB | 3189 | swm-RB | 22..372 | 30..380 | 1755 | 100 | Plus |
| CG10084-PA | 3189 | swm-RA | 373..681 | 382..690 | 1545 | 100 | Plus |
| CG10084-PB | 3189 | swm-RB | 373..681 | 382..690 | 1545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| swm-RB | 4114 | CG10084-RB | 332..1012 | 9..690 | 3307 | 99 | Plus |
| swm-RA | 4005 | CG10084-RA | 366..1046 | 9..690 | 3307 | 99 | Plus |
| swm-RD | 3974 | CG10084-RD | 332..1015 | 9..690 | 3267 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19494033..19494498 | 68..534 | 2285 | 99.8 | Plus |
| 2L | 23513712 | 2L | 19494560..19494715 | 535..690 | 780 | 100 | Plus |
| 2L | 23513712 | 2L | 19493899..19493957 | 9..67 | 217 | 89.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:01:54 has no hits.
MXO04158.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:14:31 Download gff for
MXO04158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10084-PB | 9..681 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:54 Download gff for
MXO04158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swm-RA | 374..1046 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:28 Download gff for
MXO04158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swm-RA | 374..1046 | 17..690 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:28 Download gff for
MXO04158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19493907..19493957 | 17..67 | 92 | -> | Plus |
| 2L | 19494033..19494498 | 68..534 | 99 | -> | Plus |
| 2L | 19494560..19494715 | 535..690 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:54 Download gff for
MXO04158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19493907..19493957 | 17..67 | 92 | -> | Plus |
| arm_2L | 19494033..19494498 | 68..534 | 99 | -> | Plus |
| arm_2L | 19494560..19494715 | 535..690 | 100 | | Plus |
