MXO04159.5prime Sequence
793 bp (665 high quality bases) assembled on 2007-07-18
> MXO04159.5prime
CTTTTAGAGGGTTNCANNNNANANGANGCTGCTCCGNCNGCCTTTGCTGA
CCGCCTGCTGCCTCTGCGCCGCCCAGGCGGTGTTGCACGGCAAGGATGTG
AAGCGCCGCGAGGCAGGATTCGACACATACGGTCCGCCGCCACGCCCAGC
CCCCCAGTACGGCCCACCGCCACAGCAGCAGCACGTGCCCCACCGGGAAT
ACGGCGTGCCGCAGCAGATTCCCTTCAGGGAGTACGGTCCGCNCGTCCAT
CAAATACGGCCCANCCCAAGTCTGAACTTCCNTGGGAGGCGGCNGGAGGA
AAGGCGGTGGTGGCGGTAGCTNCGCTGCACGAAGCAGAATCAAGAACCCA
CTTCGTGAGTGCNNCCAAGCCCTTCTATNGGACCCCCTGCACATNCCAGC
ACANAGCCGGCACANGCAGTANCGGTCCATCTCACCACCGAAAGCCTGCA
CCNACAATATCGGTCCTACCTCCCGCAGCTCTGCCCCACNTAGTATGGTC
CACCACCANTCCGAAGCCGGCGCTCTCAGTATNNGGTCCACCANCCAACA
CNAGTAACGGTCCANNCCGCCGCCATTGNAAGATCNCAGCANCCGCCCGG
CTTTCCACAATACGGAAACCACCGAAGCTTCAGTACNGGTCCACCCACCA
CCACCTGCAGTCTGTTGCTCTCTCGCCACATTGCCGCACTCACTCTTCAA
AGCCCGCTCCACCAGTCCAGCCACCCTCGTACGGGACCACCTGCTCTCCG
GAACCGCTGAATCTGCCCGCCCAAGCCAGATCTTTCGATGCCC
MXO04159.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:14:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9411-PA | 2982 | CG9411-RA | 6..220 | 28..242 | 1012 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9411-RA | 3684 | CG9411-RA | 317..1017 | 28..793 | 2248 | 91.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14475554..14475850 | 332..28 | 1123 | 96.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:49:58 has no hits.
MXO04159.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:14:36 Download gff for
MXO04159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9411-PA | 1..445 | 23..493 | 92 | -> | Plus |
| CG9411-PA | 475..489 | 494..508 | 100 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:52 Download gff for
MXO04159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9411-RA | 314..756 | 25..493 | 92 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:20 Download gff for
MXO04159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9411-RA | 314..756 | 25..493 | 92 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:20 Download gff for
MXO04159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14475411..14475853 | 25..493 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:52 Download gff for
MXO04159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14369444..14369886 | 25..493 | 92 | | Minus |
