MXO04160.5prime Sequence
819 bp (773 high quality bases) assembled on 2007-07-18
> MXO04160.5prime
CTTTTAGGGAGCTATCAGNNCGAATGCNANATCAGCAGCAACCTTTACAA
CATCTGCATTGCAGAAGAAAAGCTACAGCAACAACAACTGCCCGCCTTGT
GATATTCAGCAGTCCTCTTCTACTATTACTACTCACCACCCACTTGCCGC
CCACCTTACAAGCGGACAATGGCCCCGCCCCCCAAGTGGCCGCCCTTGCC
GCCCCCAATCCGGCGGGTGGCGTAGCAGGGTCTTCGATCATCGATCAATT
CAGTCCGAATTGCAGTGCTGTGACACACATTTTCCAAGCGAGAGGAATCG
ATGCCATCGAAATTCCCCAAAAACCCAGTAACGAACGAGTCCTACGATAT
TGCGAGTCCCCTTCGGTGGGCACTTGTTGCACCTACAACATGGAGACCCG
CATGGCGATGCAATCCCGCCAGCAGCTCGAAGGGCACACCAAGGACCAGA
TCTCTCGTATGTCTGGAATCCTGGGCAGCAAGGCCACAAAATTCAAAGAT
ATTTTCACGGCCCTGCTCAAAGAGTCGCGAACGCAGTTCAATAGTATGTT
CATCCGAACATACGGCGTCATTTACGAGAGAAATTCGTACGTCTTCTCGG
ATCTGTTCAAGGAGTTGGAAACCTACTTCGCCAACGGTCGCGTGGACTTG
CTGGAGGTCATGGACAAGTTCTTCAATACGCTATACCAGAAGATGTTCAC
CGTGCTGAACACCCAGTACACATTTGATGAAAACTACATGCGATGCGTCA
GCGAGCACATGAAGGAGCTGAAGCCTTTCGGAAATGTTCCGGACAAGCTG
TCCGTGCAAATCAAGCGAT
MXO04160.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:14:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32146-PA | 2298 | dlp-RA | 24..796 | 47..819 | 3840 | 99.8 | Plus |
CG32146-PB | 2820 | dlp-RB | 24..711 | 47..734 | 3440 | 100 | Plus |
CG32146-PB | 2820 | dlp-RB | 1233..1318 | 734..819 | 405 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dlp-RC | 3758 | CG32146-RC | 472..1268 | 23..819 | 3888 | 99.1 | Plus |
dlp-RA | 3761 | CG32146-RA | 472..1268 | 23..819 | 3888 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14633072..14633382 | 23..333 | 1473 | 98.1 | Plus |
3L | 28110227 | 3L | 14664834..14665070 | 497..733 | 1185 | 100 | Plus |
3L | 28110227 | 3L | 14664295..14664460 | 333..498 | 830 | 100 | Plus |
3L | 28110227 | 3L | 14667259..14667344 | 734..819 | 415 | 98.8 | Plus |
Blast to na_te.dros performed 2014-11-28 20:19:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rover | 7318 | rover ROVER 7318bp | 1536..1603 | 438..506 | 108 | 63.8 | Plus |
MXO04160.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:14:41 Download gff for
MXO04160.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32146-PA | 1..796 | 24..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:14 Download gff for
MXO04160.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dlp-RA | 472..1268 | 23..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:21 Download gff for
MXO04160.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dlp-RA | 472..1268 | 23..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:21 Download gff for
MXO04160.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14633072..14633382 | 23..333 | 98 | -> | Plus |
3L | 14664296..14664460 | 334..498 | 100 | -> | Plus |
3L | 14664836..14665070 | 499..733 | 100 | -> | Plus |
3L | 14667259..14667344 | 734..819 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:14 Download gff for
MXO04160.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14626172..14626482 | 23..333 | 98 | -> | Plus |
arm_3L | 14657396..14657560 | 334..498 | 100 | -> | Plus |
arm_3L | 14657936..14658170 | 499..733 | 100 | -> | Plus |
arm_3L | 14660359..14660444 | 734..819 | 98 | | Plus |