Clone MXO04160 Report

Search the DGRC for MXO04160

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:41
Well:60
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptdlp-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO04160.5prime Sequence

819 bp (773 high quality bases) assembled on 2007-07-18

> MXO04160.5prime
CTTTTAGGGAGCTATCAGNNCGAATGCNANATCAGCAGCAACCTTTACAA
CATCTGCATTGCAGAAGAAAAGCTACAGCAACAACAACTGCCCGCCTTGT
GATATTCAGCAGTCCTCTTCTACTATTACTACTCACCACCCACTTGCCGC
CCACCTTACAAGCGGACAATGGCCCCGCCCCCCAAGTGGCCGCCCTTGCC
GCCCCCAATCCGGCGGGTGGCGTAGCAGGGTCTTCGATCATCGATCAATT
CAGTCCGAATTGCAGTGCTGTGACACACATTTTCCAAGCGAGAGGAATCG
ATGCCATCGAAATTCCCCAAAAACCCAGTAACGAACGAGTCCTACGATAT
TGCGAGTCCCCTTCGGTGGGCACTTGTTGCACCTACAACATGGAGACCCG
CATGGCGATGCAATCCCGCCAGCAGCTCGAAGGGCACACCAAGGACCAGA
TCTCTCGTATGTCTGGAATCCTGGGCAGCAAGGCCACAAAATTCAAAGAT
ATTTTCACGGCCCTGCTCAAAGAGTCGCGAACGCAGTTCAATAGTATGTT
CATCCGAACATACGGCGTCATTTACGAGAGAAATTCGTACGTCTTCTCGG
ATCTGTTCAAGGAGTTGGAAACCTACTTCGCCAACGGTCGCGTGGACTTG
CTGGAGGTCATGGACAAGTTCTTCAATACGCTATACCAGAAGATGTTCAC
CGTGCTGAACACCCAGTACACATTTGATGAAAACTACATGCGATGCGTCA
GCGAGCACATGAAGGAGCTGAAGCCTTTCGGAAATGTTCCGGACAAGCTG
TCCGTGCAAATCAAGCGAT

MXO04160.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG32146-PA 2298 dlp-RA 24..796 47..819 3840 99.8 Plus
CG32146-PB 2820 dlp-RB 24..711 47..734 3440 100 Plus
CG32146-PB 2820 dlp-RB 1233..1318 734..819 405 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
dlp-RC 3758 CG32146-RC 472..1268 23..819 3888 99.1 Plus
dlp-RA 3761 CG32146-RA 472..1268 23..819 3888 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14633072..14633382 23..333 1473 98.1 Plus
3L 28110227 3L 14664834..14665070 497..733 1185 100 Plus
3L 28110227 3L 14664295..14664460 333..498 830 100 Plus
3L 28110227 3L 14667259..14667344 734..819 415 98.8 Plus
Blast to na_te.dros performed 2014-11-28 20:19:46
Subject Length Description Subject Range Query Range Score Percent Strand
rover 7318 rover ROVER 7318bp 1536..1603 438..506 108 63.8 Plus

MXO04160.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:14:41 Download gff for MXO04160.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32146-PA 1..796 24..819 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:14 Download gff for MXO04160.5prime
Subject Subject Range Query Range Percent Splice Strand
dlp-RA 472..1268 23..819 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:21 Download gff for MXO04160.5prime
Subject Subject Range Query Range Percent Splice Strand
dlp-RA 472..1268 23..819 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:21 Download gff for MXO04160.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14633072..14633382 23..333 98 -> Plus
3L 14664296..14664460 334..498 100 -> Plus
3L 14664836..14665070 499..733 100 -> Plus
3L 14667259..14667344 734..819 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:14 Download gff for MXO04160.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14626172..14626482 23..333 98 -> Plus
arm_3L 14657396..14657560 334..498 100 -> Plus
arm_3L 14657936..14658170 499..733 100 -> Plus
arm_3L 14660359..14660444 734..819 98   Plus