MXO04162.5prime Sequence
291 bp (289 high quality bases) assembled on 2007-07-18
> MXO04162.5prime
CCCTTTAAGAGAGTTNATCAATCNANATGAATCNAAAAATGTACCGTACA
GGGCCCACGCAGTTCCAGCAGCAACCCCAGTTTGGGGCTCCTCCTCCGAA
TTCCGGAGGTTGGCCACCGCAGCAACAACAACTACCGCAGCAGCAGCCGC
CGCAGCAACAACTGCCTCCGCAGCAGCAGCAACAACAACCACAGTACGGA
GCACCACCACCAACGTCGGCGGCATCCCAGCCTTACCTCAATGGCAACTA
CCAGCAGCAGTTGGCCACGTCGATGGGAGGTTTGAGTGTGG
MXO04162.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:14:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10882-PA | 3582 | CG10882-RA | 27..265 | 53..291 | 1195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec24CD-RA | 4155 | CG10882-RA | 304..568 | 27..291 | 1209 | 97 | Plus |
| Sec24CD-RC | 4155 | CG10882-RC | 304..568 | 27..291 | 1209 | 97 | Plus |
| Sec24CD-RB | 4827 | CG10882-RB | 304..568 | 27..291 | 1209 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2236308..2236541 | 260..27 | 1054 | 96.6 | Minus |
Blast to na_te.dros performed 2014-11-28 20:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6913 | 114..260 | 287 | 70.9 | Plus |
MXO04162.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 13:14:49 Download gff for
MXO04162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10882-PA | 23..265 | 49..291 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:32 Download gff for
MXO04162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gho-RB | 326..568 | 49..291 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:24 Download gff for
MXO04162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec24CD-RB | 326..568 | 49..291 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:24 Download gff for
MXO04162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2235869..2235899 | 261..291 | 100 | <- | Minus |
| 2L | 2236308..2236519 | 49..260 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:32 Download gff for
MXO04162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2235869..2235899 | 261..291 | 100 | <- | Minus |
| arm_2L | 2236308..2236519 | 49..260 | 99 | | Minus |
